Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0066 ATGGGAGGTGACAGTGCCGTTGATGATGCCACCGCCCCCCAGTCCAAGGGCGGTGATGGAGTGAGTATCAACATTCGATGCTCCAATGGTTCGAAATTCTCGGTTCTGATTAGCCTCGAGTCCACCGTCGGATTGTTCAAGGAGCTAATCGCTCGGAATTGCGATATCCCTGCCGATCAACAGCGGCTGATTTACAAGGGCCGGATCTTAAAGGACGATCAAATCCTGCAAAGCTACGGTTTGGAGGCAGATCATACAGTTCATTTGGTTCGTGGCTTTGCCCCAGCTGCTGCAGCCAGTACAGCTAGTGGGACCAATACCAGTGGTGCAAATACCACAACAAATAATGCCAGAAGTGCTGCTAATGAAGGTGGGGGTCTTGGAGGTTCTGGTTTTGGAGATTCACTGTTTCCTGGACTAGGTGTCAATGGGCTTGGGGGAAGTGGCATCAATGGCTTGTTTGGAGCAGGCCTACTGGATCCTGAACAGATGCAGCAATCATTTATTTCTAATCCCAATATGATGAGAGAAATGATGAACACGCCTGCTATACAGAATCTACTTAATAATCCTGAGATAATGCGGAGTTTTATTATGAGCAATCCACAATTACGAGAGCTTATGGACCGAAATCCTGAGCTAGCACACATACTTAATGATCCAGCCACTCTCCGTCAAACACTTGAAGCTACAAGAAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGACGCATGTATGAAAATGTTCAAGAGCCATTCTTAGATGCTACAACAATGGCTGGTAATACAGGAAATGACAACTCTAACCCGTTTGCTGCACTTTTGGGCACTCAAGGTGGACAAGCCACGGATCGATCTACTAATCCTTCAACTACCAGTGCTGATGCAGCCGCTGGCTCTCCCTCCCCCAATACCAACCCACTTCCTAATCCTTGGTCCTCTACTGGATCTGGAGGTACTCAAAATAACACTGCAAGGACAACTACTGGTGGGGAGAGTAGGCAGCAGGCACCTGCTGGCTTAGGAGGATTTGGTCTGCAGGATTATCAAGGTCTGCTGGGTGCTATGCCTGATCCCTCCTCGTTGACCCAGTTAATGCAAAATCCTGCTATTTCACAAATGATGCAAAGTATCCTTTCCAACCCACAGGCTTTGAACCAGATTCTTGGTGTCAATCCTGACCAGCGTGGCTTACCAGATCTAAATTCTCATCTGAGAGAAGTGATGCAAAATCCTGAGTTTCTTCGCTTGTTGTCTTCACCTGAGACAATGCAGCAACTCTTGTCTTTTCAGCAAGCTCTTCTTTCACAGATTGGTCGGTCACCATCAACACAGGAGTCAGGTCAGACTGGTGGAGGCACTGGAGCGATGAATAACTCGGGGTTGGAGATGTTGATGAACATGTTTGGTGGACTTGGAGCTGGTAGCCTTGCTGTTCCAAACAGATCAAATGAGCCACCGGAGCAAATGTATGCTACCCAGTTGTCGCAGCTTCAAGAGATGGGCTTCTTTGATACGCAAGAAAACATTCGAGCGCTCATCGCCACTCAAGGGAATGTTCATGCAGCAGTCGAACGGCTTCTGGGGAACTCTGGCCAGTAG 1659 0.4786 MGGDSAVDDATAPQSKGGDGVSINIRCSNGSKFSVLISLESTVGLFKELIARNCDIPADQQRLIYKGRILKDDQILQSYGLEADHTVHLVRGFAPAAAASTASGTNTSGANTTTNNARSAANEGGGLGGSGFGDSLFPGLGVNGLGGSGINGLFGAGLLDPEQMQQSFISNPNMMREMMNTPAIQNLLNNPEIMRSFIMSNPQLRELMDRNPELAHILNDPATLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLDATTMAGNTGNDNSNPFAALLGTQGGQATDRSTNPSTTSADAAAGSPSPNTNPLPNPWSSTGSGGTQNNTARTTTGGESRQQAPAGLGGFGLQDYQGLLGAMPDPSSLTQLMQNPAISQMMQSILSNPQALNQILGVNPDQRGLPDLNSHLREVMQNPEFLRLLSSPETMQQLLSFQQALLSQIGRSPSTQESGQTGGGTGAMNNSGLEMLMNMFGGLGAGSLAVPNRSNEPPEQMYATQLSQLQEMGFFDTQENIRALIATQGNVHAAVERLLGNSGQ 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0066 552 SMART CBM 369 407 IPR006636 -
Prci10g0066 552 SMART CBM 411 446 IPR006636 -
Prci10g0066 552 SMART CBM 201 240 IPR006636 -
Prci10g0066 552 SMART CBM 151 188 IPR006636 -
Prci10g0066 552 CDD UBA_PLICs 510 548 - -
Prci10g0066 552 Gene3D - 196 254 - -
Prci10g0066 552 SUPERFAMILY UBA-like 506 548 IPR009060 GO:0005515
Prci10g0066 552 MobiDBLite consensus disorder prediction 458 478 - -
Prci10g0066 552 MobiDBLite consensus disorder prediction 278 354 - -
Prci10g0066 552 SMART ubq_7 21 92 IPR000626 GO:0005515
Prci10g0066 552 MobiDBLite consensus disorder prediction 278 359 - -
Prci10g0066 552 SMART uba_6 510 548 IPR015940 -
Prci10g0066 552 MobiDBLite consensus disorder prediction 1 21 - -
Prci10g0066 552 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Prci10g0066 552 PANTHER UBIQUILIN 16 547 IPR015496 -
Prci10g0066 552 Pfam UBA/TS-N domain 510 546 IPR015940 -
Prci10g0066 552 FunFam Ubiquitin domain-containing protein DSK2b 18 105 - -
Prci10g0066 552 MobiDBLite consensus disorder prediction 100 122 - -
Prci10g0066 552 FunFam Ubiquitin domain-containing protein DSK2b 198 254 - -
Prci10g0066 552 FunFam Ubiquitin domain-containing protein DSK2b 493 551 - -
Prci10g0066 552 MobiDBLite consensus disorder prediction 100 121 - -
Prci10g0066 552 CDD Ubl_Dsk2p_like 21 93 - -
Prci10g0066 552 Pfam Ubiquitin family 23 90 IPR000626 GO:0005515
Prci10g0066 552 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 504 549 IPR015940 -
Prci10g0066 552 SUPERFAMILY Ubiquitin-like 12 109 IPR029071 -
Prci10g0066 552 Gene3D - 492 552 - -
Prci10g0066 552 Gene3D - 10 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0066 Prci-Chr10 422654 431037 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0066 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 5.28e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0066 K04523 - gmx:100776447 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0066 10 422654 431037 Prci5g2169 5 39015506 39020561 CCT
Prci10g0066 10 422654 431037 Prci10g0066 10 422654 431037 ECH