Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0034 ATGTCGCCGAAACCTGAGTCTGCTTCAAAGTCAAACCCCTACTTCAAACCCGGCTCCACCGTCGAGGTAAGCTCTGACGATGAAGGATTTCGCGGATCTTGGTTCGTTGGCACCATTATACGCCGCTGCACTTCCAAGAAAAACCAGAACAAATTCTTGGTGGAGTACAAGACCATCGTGGCCGACGAAAAGGGCTCCAAACCCCTGAGAGAGATGCTGGAGCTTCACCAACTTCGACCCCCTGCCCCAAGGGAGACTGACCGTGAATTCAAGTTCGGCGAGGAGGTCGATGCATACCACAATGATGGCTGGTGGGAAGGCTCCATAACCGAAGAATTGGGAAACGGCAGGTTCGCGGTGTACTTCAGGGCCTCAAAGGAGCAGATTGATTTCCGGAAGGAGGACCTTAGGCTTCATCGCGAGTGGGTCAATGGGAATTGGGTCCCTCCGTTGGAAGAGCCGTCGGAGGAAAAGAAAATTTTACCAAACGATGTGAAGGCTGGTGAAGAAACAATGACGGACATGTTTTGCAAGGGGACACTAGTTGAGGTTAGCAGTGACGAGGAAGGTTTTGAAGGAGCTTGGTTTGCTGCTACTGTTGTTAAACCAAAGGGAAAAGATAAGTTTCTTGTTGAGTACCTGAACCTACGGACTGATGATGATTCGGAGTTTTTGAAAGAGGAAATTGATATCTTACATATTCGGCCTTATCCACCAGAACATATTTGTGGTCAGTTTAATTTTCTTCAGGAAGTTGATGCTTTGTACAATGACGGATGGTGGGTTGGAGTGATTTCTAAAGTGCTCGGCAACTCAAGGTATGTAGTATACTTCAGGAACACTAATGAAGAATTAGAGTTTCCGCACTCCGAGTTAAGGCTACATCAGGACTGGATCAGTGGAAAATGGGTCATTGCTTCGCAGGCATTGAAGTTGTAG 939 0.476 MSPKPESASKSNPYFKPGSTVEVSSDDEGFRGSWFVGTIIRRCTSKKNQNKFLVEYKTIVADEKGSKPLREMLELHQLRPPAPRETDREFKFGEEVDAYHNDGWWEGSITEELGNGRFAVYFRASKEQIDFRKEDLRLHREWVNGNWVPPLEEPSEEKKILPNDVKAGEETMTDMFCKGTLVEVSSDEEGFEGAWFAATVVKPKGKDKFLVEYLNLRTDDDSEFLKEEIDILHIRPYPPEHICGQFNFLQEVDALYNDGWWVGVISKVLGNSRYVVYFRNTNEELEFPHSELRLHQDWISGKWVIASQALKL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0034 312 CDD Tudor_Agenet_AtDUF_rpt1_3 176 239 - -
Prci10g0034 312 MobiDBLite consensus disorder prediction 1 26 - -
Prci10g0034 312 CDD Tudor_Agenet_AtDUF_rpt1_3 15 83 - -
Prci10g0034 312 CDD Tudor_Agenet_AtDUF_rpt2_4 249 294 - -
Prci10g0034 312 Gene3D - 161 248 - -
Prci10g0034 312 SMART agenet_At_2 88 144 IPR014002 -
Prci10g0034 312 SMART agenet_At_2 13 86 IPR014002 -
Prci10g0034 312 SMART agenet_At_2 174 242 IPR014002 -
Prci10g0034 312 SMART agenet_At_2 244 300 IPR014002 -
Prci10g0034 312 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 170 306 - -
Prci10g0034 312 Pfam Agenet domain 251 300 IPR008395 -
Prci10g0034 312 Pfam Agenet domain 93 151 IPR008395 -
Prci10g0034 312 Pfam Agenet domain 18 83 IPR008395 -
Prci10g0034 312 Pfam Agenet domain 179 239 IPR008395 -
Prci10g0034 312 CDD Tudor_Agenet_AtDUF_rpt2_4 93 138 - -
Prci10g0034 312 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0034 Prci-Chr10 259115 267131 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0034 186 298 PHD Transcription Factor Family AT5G58610 29.851 1.09e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0034 - - qsa:O6P43_007411 468.774