Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci10g0033 | ATGTCGCCGAAACCTGAGTCTGCTTCAAAGTCAAACCCCTACTTCAAACCCGGCTCCACCGTCGAGGTAAGCTCTGACGATGAAGGATTTCGCGGATCTTGGTTCGTTGGCACCATTATACGCCGCTGCACTTCCAAGAAAAACCAGAACAAATTCTTGGTGGAGTACAAGACCATCGTGGCCGACGAAAAGGGCTCCAAACCCCTGAGAGAGATGCTGGAGCTTCACCAACTTCGACCCCCTGCCCCAAGGGAGACTGACCGTGAATTCAAGTTCGGCGAGGAGGTCGATGCATACCACAATGATGGCTGGTGGGAAGGCTCCATAACCGAAGAATTGGGAAACGGCAGGTTCGCGGTGTACTTCAGGGCCTCAAAGGAGCAGATTGATTTCCGGAAGGAGGACCTTAGGCTTCATCGCGAGTGGGTCAATGGGAATTGGGTCCCTCCGTTGGAAGAGCCGTCGGAGGAAAAGAAAATTTTACCAAACGATGTGAAGGCTGGTGAAGAAACAATGACGGACATGTTTTGCAAGGGGACACTAGTTGAGGTTAGCAGTGACGAGGAAGGTTTTGAAGGAGCTTGGTTTGCTGCTACTGTTGTTAAACCAAAGGGAAAAGATAAGTTTCTTGTTGAGTACCTGAACCTACGGACTGATGATGATTCGGAGTTTTTGAAAGAGGAAATTGATATCTTACATATTCGGCCTTATCCACCAGAACATATTTGTGGTCAGTTTAATTTTCTTCAGGAAGTTGATGCTTTGTACAATGACGGATGGTGGGTTGGAGTGATTTCTAAAGTGCTCGGCAACTCAAGGTATGTAGTATACTTCAGGAACACTAATGAAGAATTAGAGTTTCCGCACTCCGAGTTAAGGCTACATCAGGACTGGATCAGTGGAAAATGGGTCATTGCTTCGCAGTTGTAG | 930 | 0.4763 | MSPKPESASKSNPYFKPGSTVEVSSDDEGFRGSWFVGTIIRRCTSKKNQNKFLVEYKTIVADEKGSKPLREMLELHQLRPPAPRETDREFKFGEEVDAYHNDGWWEGSITEELGNGRFAVYFRASKEQIDFRKEDLRLHREWVNGNWVPPLEEPSEEKKILPNDVKAGEETMTDMFCKGTLVEVSSDEEGFEGAWFAATVVKPKGKDKFLVEYLNLRTDDDSEFLKEEIDILHIRPYPPEHICGQFNFLQEVDALYNDGWWVGVISKVLGNSRYVVYFRNTNEELEFPHSELRLHQDWISGKWVIASQL | 309 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci10g0033 | 309 | CDD | Tudor_Agenet_AtDUF_rpt1_3 | 176 | 239 | - | - | |
| Prci10g0033 | 309 | CDD | Tudor_Agenet_AtDUF_rpt1_3 | 15 | 83 | - | - | |
| Prci10g0033 | 309 | Gene3D | - | 161 | 248 | - | - | |
| Prci10g0033 | 309 | PANTHER | AGENET DOMAIN-CONTAINING PROTEIN-RELATED | 170 | 305 | - | - | |
| Prci10g0033 | 309 | CDD | Tudor_Agenet_AtDUF_rpt2_4 | 249 | 294 | - | - | |
| Prci10g0033 | 309 | Pfam | Agenet domain | 93 | 151 | IPR008395 | - | |
| Prci10g0033 | 309 | Pfam | Agenet domain | 251 | 300 | IPR008395 | - | |
| Prci10g0033 | 309 | Pfam | Agenet domain | 179 | 239 | IPR008395 | - | |
| Prci10g0033 | 309 | Pfam | Agenet domain | 18 | 83 | IPR008395 | - | |
| Prci10g0033 | 309 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Prci10g0033 | 309 | SMART | agenet_At_2 | 88 | 144 | IPR014002 | - | |
| Prci10g0033 | 309 | SMART | agenet_At_2 | 13 | 86 | IPR014002 | - | |
| Prci10g0033 | 309 | SMART | agenet_At_2 | 174 | 242 | IPR014002 | - | |
| Prci10g0033 | 309 | SMART | agenet_At_2 | 244 | 300 | IPR014002 | - | |
| Prci10g0033 | 309 | CDD | Tudor_Agenet_AtDUF_rpt2_4 | 93 | 138 | - | - | |
| Prci10g0033 | 309 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci10g0033 | Prci-Chr10 | 259113 | 267131 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci10g0033 | 186 | 298 | PHD Transcription Factor Family | AT5G58610 | 29.851 | 1.12e-10 | 60.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci10g0033 | - | - | qsa:O6P43_007411 | 462.225 |