Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0032 ATGACTGCAATAGCAGAGCTTGTTGACTACTACGGGTGGAGGGAGGTCATTGCAATCTATGTGGACGATGATCACGGAAGAAACGGGATCAGTGCATTAGGAGATAAGCTCGCGGAGAGACGGTGCAGGATCTCTTATAAAGCTCCGATGAGCCCCGAAGCAACAAGGGAGGAGATCACGAACGTGCTTGTTCAGGTGGCTCTGGCAGAGTCCAGGATCATAATTCTACACGCCAGTTCTGCCTGGGGCCCCAAGGTGTTCAGAGTGGCCAAGTATCTGGAAATGATGGGATCCGGCTATGTTTGGATAGCCACTCATTTCCTCTCCACTCTTCTGGATACAAACGGTCCGCTCCCTCACGATACCATGGACATGATTCAAGGGGTTCTTACGCTGCGTATGTACACCCCCGATTCAGAGCTCAAACGAAGATTCGTTTCTCGGTGGAAAAACTTGACTCGCGCCACTACCACTGTTCACCACCTTGGATTGAGTACGTTTGGCCTCTTTGCATATGATACTGTTTACGCGCTTGCTCGCGCGCTTGACAGTTTTTTCAAACAAGGGAATCGAATCACATTCTCGTACGATCCCAAATTGTCTGAGCTGCGCCGCGACAACTTGAATCTGGAATCCGTGAGCATCTTCGATCAAGGAAACGTGTTGAGGGAAAGTATCTACGAGGTTGAAATGACTGGGGTAACGGGTTCCTTCAAGTATGCATCCGATGGAAACCTGGTCAATCCAGCATATGAAATCCTCAACGTGATAGGGACGGGATCTAGGAAGATCGGTTATTGGAGTAACTACACTGGATTATCTGTTGTTGCTCCGGAAGTACTCTATGCACGCCCGCCAAATCGTTCGGCGGCGAGCCAGAAGCTGCGACCGGTGATTTGGCCTGGGGACACAGAGCAGAAGCCTCGTGGTTGGGTTTTTCCGAGCAGTGGGAGGCTCTTAAAAATTGGAGTGCCGGTAGGATTTAGTTACCGTCAGTTTGTCTCGCAAGTACAGGGCACTGACATGTTCAAGGGCTTCTGCATTGATGTGTTTCTTTCTGCACTGAACTTGCTGCCTTATGGCGTCCCTTATAGGCTCGTTCCATTTGGGGATGGTCGCAGCAATCCTGATAACAACGAGCTCGTTCGTTTGATCACGGCGGGTGTCTTTGACGGAGCAGTTGGTGACATTACAATCACTACGGAGCGAACAAAGATGGTAGATTTCACTCAGCCATTTATTGGGTCCGGCCTGGTAGTTGTAGCCCCAGTTAGGAAGTCAGACTCGAGTGCCTGGGCCTTTTTGAGACCCTTTAGTCCGGAGATGTGGGGTGTCACGGCCATCGTTTTCCTGGCTGTTGGGGCTGTTGTTTGGATTTTGGAGCATAGATTGAATGATGAATTCCGGGGACCTCCCAGAAGACAATTAACTACGGTTTTGTGGTTCAGTTTTTCAACCATGTTTTTCGCCCACAGGGAAAACACAGTGAGCACTCTTGGTCGAATTGTGCTTCTTATATGGTTGTTCGTGGTTCTCATAATAAAATCTAGTTACACGGCAAGCCTGACCTCAATCCTCACCGTGCAGCAGCTTTCTTCTCCCATTAAAGGCATTGAGACCTTAGTTGCTAGCAAAGAGCCTGTTGGCTACCTGGAGGGTTCTTTCAGTAGGAACTATCTAATTGAAGAAACTGGAATTGATGAATCCAGACTTGTTCCTCTGAGGACACCAGAAGAGTCTGCCAGAGCATTGAGAGACGGTCCCAAAAAGGGCGGCGTTGCCGCCTACGTTGATGAGCGTGCTTACATTGAACTCTTCCTTTCAAGCCGATGCGAGTTCTCCATAGTTGGCCGAGAGTTTACCAGAAATGGTTGGGGATTTGCTTTTCCAAGAGACTCGCCTCTGGCGGTTGACATGTCGAGTGCAATATTGAAATTGGCAGAGAATGGAGAACTGCGGAGGATTCATGACAAGTGGTTGCTGAATATCGCGTGCCTATCACAAAACACCAAGTTTGAAGTGGACAGACTTCGTCTTAAAAGCTTTTGGGGGCTGTATCTGGCGTGCGGGGTGGCGTGCGGGGTGGCTTTATTCATATATCTCATACGGATGATGAGGCAGTACAAGAAGCACTACGTAGCGGAGGTGGATTCCGGCACTGGATCTTCTTCCAGCATTCGTACTTTCCTTACATTTGCAGCCCAGAAAGAATCTGAAGTGAAAAGCCGATCCAAGACCAAGAGAAGGCTCTCTCGCGGAAGCACAAGTGCTGGCGGATTAGTCATCAACTCCATCGGACAATGCTCTCTCTCATCTTCCGCTCAGGCCTGA 2331 0.4938 MTAIAELVDYYGWREVIAIYVDDDHGRNGISALGDKLAERRCRISYKAPMSPEATREEITNVLVQVALAESRIIILHASSAWGPKVFRVAKYLEMMGSGYVWIATHFLSTLLDTNGPLPHDTMDMIQGVLTLRMYTPDSELKRRFVSRWKNLTRATTTVHHLGLSTFGLFAYDTVYALARALDSFFKQGNRITFSYDPKLSELRRDNLNLESVSIFDQGNVLRESIYEVEMTGVTGSFKYASDGNLVNPAYEILNVIGTGSRKIGYWSNYTGLSVVAPEVLYARPPNRSAASQKLRPVIWPGDTEQKPRGWVFPSSGRLLKIGVPVGFSYRQFVSQVQGTDMFKGFCIDVFLSALNLLPYGVPYRLVPFGDGRSNPDNNELVRLITAGVFDGAVGDITITTERTKMVDFTQPFIGSGLVVVAPVRKSDSSAWAFLRPFSPEMWGVTAIVFLAVGAVVWILEHRLNDEFRGPPRRQLTTVLWFSFSTMFFAHRENTVSTLGRIVLLIWLFVVLIIKSSYTASLTSILTVQQLSSPIKGIETLVASKEPVGYLEGSFSRNYLIEETGIDESRLVPLRTPEESARALRDGPKKGGVAAYVDERAYIELFLSSRCEFSIVGREFTRNGWGFAFPRDSPLAVDMSSAILKLAENGELRRIHDKWLLNIACLSQNTKFEVDRLRLKSFWGLYLACGVACGVALFIYLIRMMRQYKKHYVAEVDSGTGSSSSIRTFLTFAAQKESEVKSRSKTKRRLSRGSTSAGGLVINSIGQCSLSSSAQA 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0032 776 Gene3D - 630 660 - -
Prci10g0032 776 Pfam Bacterial extracellular solute-binding proteins, family 3 377 660 IPR001638 -
Prci10g0032 776 Pfam Ligand-gated ion channel 661 693 IPR001320 GO:0015276|GO:0016020
Prci10g0032 776 Gene3D - 322 430 - -
Prci10g0032 776 FunFam Glutamate receptor 1 155 - -
Prci10g0032 776 Gene3D - 207 321 - -
Prci10g0032 776 Gene3D - 431 555 - -
Prci10g0032 776 SUPERFAMILY Periplasmic binding protein-like I 2 312 IPR028082 -
Prci10g0032 776 FunFam Glutamate receptor 315 431 - -
Prci10g0032 776 Pfam Receptor family ligand binding region 2 258 IPR001828 -
Prci10g0032 776 FunFam Glutamate receptor 557 664 - -
Prci10g0032 776 Gene3D - 1 163 - -
Prci10g0032 776 CDD GluR_Plant 320 660 - -
Prci10g0032 776 FunFam Glutamate receptor 431 561 - -
Prci10g0032 776 SMART GluR_14 321 662 IPR001320 GO:0015276|GO:0016020
Prci10g0032 776 Gene3D - 589 629 - -
Prci10g0032 776 PIRSF IGluLR_plant 1 759 IPR017103 -
Prci10g0032 776 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 9 736 IPR015683 -
Prci10g0032 776 SUPERFAMILY Periplasmic binding protein-like II 298 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0032 Prci-Chr10 240257 243588 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0032 1 750 Ion Channels AT3G51480 60.743 0.0 966
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0032 K05387 - gmx:100788917 1149.81