Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0023 ATGACCCGATCGCTTCGATTTCTCAATTCTCTCGACCGCGTCGCCGCCACCGCCGCTCCCCCACCCGAGGCCGTCGCCGTCGAGTCCGACTTCGTCGTTATTCTCGCCGCTCTCCTCTGCGCCCTCATATGCGTCGTCGGCCTCATCGCTGTCGCCCGCTGCGCCTGGCTCCGCAGGGGATCCGGCCCCTCCGCCTCCCCCGCCCGGGCCCTGGCCAACAAGGGTCTCAAGAAGAAGGTGCTGCAGTCGCTCCCGAGATTTACCTACGTTAACGGCAGCCCCAATAAGTGGGTGGTGACATCGGAGTGCGCGATTTGCCTGGCCGAATTCGCCGACGGCGACGAGATCCGGGTGCTCCCTCAGTGTGGGCACGGGTTTCACGTGGCCTGCATCGACACGTGGCTGGGGTCCCACTCTTCGTGCCCTTCTTGTCGGCAGATTCTGGCGGTGGCCAGGTGCCAGAGGTGCGGCCAGTACCCCGCGGCAGGGGCCGGGGGGTCAGCTGGAGCCGCTAGCAGCTCCGCCGGAGAACCTGAGCTGAAGTCCAGGGAGGATGGCAATGCCGTGTCCACTGCTGCCAGTAATAACATAAGCAGCGGGTCTAATAATTTCTTGCCTTGA 621 0.6441 MTRSLRFLNSLDRVAATAAPPPEAVAVESDFVVILAALLCALICVVGLIAVARCAWLRRGSGPSASPARALANKGLKKKVLQSLPRFTYVNGSPNKWVVTSECAICLAEFADGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILAVARCQRCGQYPAAGAGGSAGAASSSAGEPELKSREDGNAVSTAASNNISSGSNNFLP 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0023 206 CDD RING-H2_EL5-like 102 145 - -
Prci10g0023 206 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Prci10g0023 206 SUPERFAMILY RING/U-box 83 150 - -
Prci10g0023 206 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 23 157 - -
Prci10g0023 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 150 IPR013083 -
Prci10g0023 206 SMART ring_2 103 144 IPR001841 -
Prci10g0023 206 MobiDBLite consensus disorder prediction 164 206 - -
Prci10g0023 206 Pfam Ring finger domain 102 145 IPR001841 -
Prci10g0023 206 MobiDBLite consensus disorder prediction 187 206 - -
Prci10g0023 206 FunFam E3 ubiquitin-protein ligase ATL6 64 151 - -
Prci10g0023 206 SMART FANCL_C_2 99 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0023 Prci-Chr10 211920 213025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0023 26 156 C3H Transcription Factor Family AT1G20823 68.794 3.68e-62 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0023 - - pcin:129322223 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0023 10 211920 213025 Prci5g2108 5 38567022 38568023 CCT
Prci10g0023 10 211920 213025 Prci10g0023 10 211920 213025 ECH