Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1096g0001 ATGGAAGATGTGAAAAGAGTTGCTTGTTTCGTCTTCTTTCTGTGGAAATGGTTGGCTGCTGCTGGTGACACTGACAGTCTTCTTTCACCAAAGGGTGTGAACTATGAAGTTGCTGCTTTGATGTCAATGAAGAATAAAATGAAAGACGAATTGCGTGTTATGGATGGTTGGGATATCAATTCGGTTGATCCTTGTACTTGGAACATGGTCGGTTGCTCTGCTGAGAACAATGTTATTTCGCTGGACATGGCCAGTATGGGTTTATCTGGAACGCTGTCTCCCGGAATTGGAAATTTGAGCCGCCTCCGAACACTGTTGTTGCAGAACAATCAATTATCTGGATCTGTGCCTGCTGAGGTAGGAAAGCTTTTGGAGCTTCAGACTCTTGACCTTTCTGGTAACCAGTTTGTTGGTGAAATCCCTAGTTCTCTGGGCTTTTTGACTCGTCTTAGTTACTTGCGGCTTAGTAGAAATAAACTATATGGGCAGATTCCTCAACTCGTTGCAAATCTCACAGGCCTTTCATTCTTGGACTTGTCATTCAATAATCTCAGTGGTCCCACTCCAAAAATTTTAGCAAAAGGTTACAGTATTTCAGGAAACAACTTCCTTTGTGCATCTTCATCACCCCAAATTTGTATGGGCGGTTCAAATCCACTAAATGAAACTGGTTCGTCACTAGAAGCTGGTAATCATCACCATCGGGTGCTATCTGTTGCTATTGGCATTAGCTGTACATTTTTAATTTCAGTAATGCTGCTTGTCTGCTGCGTGCATTGGTACAGATCACGCATCCTGTATGCCTCCTATGTAAAGGAAGATTATGAATTTGACATTGGTCATTTGAGGAGGTTCTCCTTCCGTGAATTGCAATCTGCTACTAGTAATTTCAGTCCAAAAAATATCCTAGGTCAAGGTGGATTTGGTGTTGTCTACAAAGGATGTCTTCCAAATAAAATGACGGTGGCAGTGAAGAGGCTGAAAGATCCCAATTACACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAGATGATTGGCTTGGCAGTGCATCGGAATCTCTTGCGTCTCTATGGATTTTGTATGACATCTGATGAGAGGCTGCTTGTTTACCCATACATGCCTAATGGCAGTGTTGCTGATCGCTTGAGAGACACTTGCCGTGAAAAGCCATCATTGGACTGGAATAGGCGAATGCGTATTGCTCTTGGGGCAGCTCGTGGGCTTCTATATTTACATGAGCAGTGTAGCCCAAAAATTATCCACAGGGACGTTAAGGCTGCAAACATTTTGCTAGATGAAAGTTTTGAAGCTGTGGTGGGGGATTTTGGTCTTGCTAAGCTCTTGGATCAAAGGGATTCGCATGTCACTACTGCAGTACGAGGCACGGTAGGGCACATTGCCCCTGAGTATCTCTCCACTGGGCAGTCTTCTGAGAAAACTGATGTTTTTGGATTTGGCATATTGCTTTTGGAGCTCATCACAGGGCAGAAGGCTTTGGATGCTGGAAATGGTCAGATCCAGAAGGGAATGATTCTTGATTGGGTTAAAACCTTATTTGAGGAGAAGCAACTGGAAGTGTTAGTTGATAGGAATCTGAGGGGACGTTTTGATCCAATAGAGTTGGAAAAAGCAGTGAAGCTGTCTTTACAATGCACTCAATCACATCCCAGCCTCCGGCCAAAGATGTCAGCAGTCTTGAGGATACTGGAAGGCCTAGTCGGACAGGGCCAACCGGAGGAGGAGTCACATGGAAGAGCCATTTATGATGAAAGGAATTGCAGTTTCTCCAGAAATTATAGTGATGGGCATGATGAACCTTCTTTTATTATTGAAGCCATTGAACTTTCTGGACCTAGGTGA 1860 0.4376 MEDVKRVACFVFFLWKWLAAAGDTDSLLSPKGVNYEVAALMSMKNKMKDELRVMDGWDINSVDPCTWNMVGCSAENNVISLDMASMGLSGTLSPGIGNLSRLRTLLLQNNQLSGSVPAEVGKLLELQTLDLSGNQFVGEIPSSLGFLTRLSYLRLSRNKLYGQIPQLVANLTGLSFLDLSFNNLSGPTPKILAKGYSISGNNFLCASSSPQICMGGSNPLNETGSSLEAGNHHHRVLSVAIGISCTFLISVMLLVCCVHWYRSRILYASYVKEDYEFDIGHLRRFSFRELQSATSNFSPKNILGQGGFGVVYKGCLPNKMTVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTSDERLLVYPYMPNGSVADRLRDTCREKPSLDWNRRMRIALGAARGLLYLHEQCSPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNGQIQKGMILDWVKTLFEEKQLEVLVDRNLRGRFDPIELEKAVKLSLQCTQSHPSLRPKMSAVLRILEGLVGQGQPEEESHGRAIYDERNCSFSRNYSDGHDEPSFIIEAIELSGPR 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1096g0001 619 SMART serkin_6 297 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1096g0001 619 Gene3D Phosphorylase Kinase; domain 1 267 372 - -
Prci1096g0001 619 FunFam Somatic embryogenesis receptor-like kinase 1 373 586 - -
Prci1096g0001 619 SUPERFAMILY L domain-like 35 203 - -
Prci1096g0001 619 FunFam Somatic embryogenesis receptor kinase 1 267 372 - -
Prci1096g0001 619 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524
Prci1096g0001 619 ProSiteProfiles Protein kinase domain profile. 297 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1096g0001 619 Pfam Leucine Rich repeats (2 copies) 101 141 IPR025875 -
Prci1096g0001 619 SUPERFAMILY Protein kinase-like (PK-like) 281 571 IPR011009 -
Prci1096g0001 619 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Prci1096g0001 619 FunFam Putative LRR receptor-like serine/threonine-protein kinase 33 215 - -
Prci1096g0001 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Prci1096g0001 619 Pfam Protein kinase domain 300 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1096g0001 619 Gene3D Transferase(Phosphotransferase) domain 1 373 580 - -
Prci1096g0001 619 Gene3D Ribonuclease Inhibitor 33 215 IPR032675 -
Prci1096g0001 619 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 568 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1096g0001 41 619 Receptor kinase-like Gene Family AT5G45780 71.897 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Prci1096g0001 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1096g0001 - - gmx:100810610 1023.08