Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1094g0003 ATGCTATCGCCGCTACCATTTGCGGCGGACGAAGATTCCAATGGAAGGTGGCCGCAATTCCCAATCAACAACGAACTATTCGATTCACGTTCAACATTTGATCATCTTCCTCCGTTTCAAGCGGCCCAGAACATCCGAAAGCAGTCACTTCGATCACTCGCCATTCCCCCCGCCAGGATGCACCACCTTCAAAATCCTCCGACAAACAGAGGAGGAACGAGCCACATTTTTTACAAGACTCGCCCTTGTGCTAAATTCAAAATGGGCACCTGTAGGAACGGCGAGAATTGCAATTTTGCTCATGGCGAAGAGGACATGAGGCAGCCACCACCAAATTGGCAGGCACTTGTTGGTTTGCGCGATGAAGAACGGCCGTCTGGAAACTGGGACGATGACCAAAAAATCATACATAAGATGAAGCTGTGCAAGAAGTATTACAATGGTGAGGAATGTCCTTATGGTGAAAGGTGCAATTTTCTTCATGAAGACCCGTCCAAGTTCAGGGATGATGCAGGGAGGAGCAGGGAGAGCTCAGCTATAAGCCTTGTGGCTAATGTCTCCAAGTCGCACTTGAATGGCCCTAATAATTCAGACAATAATAAGACTGTCAACTCTGGTTGTGATGGTTTTAGAACAAATGGGAAGGCTCCTTTCTGGAAGACCAAGTTATGTAGCAAGTGGGAGACAACAGGACAGTGCCCTTTCGGCGATAAATGTCATTTTGCTCATGGACAAGCAGAGTTACAAGCGCCTTGTGGACGCGGTGAAGCAGAAGCTATAGGAGCACAATCAATTCCAATAAATGATATAACTCCTATAAACACTGCAAGTATACTTGATTCAAAAGAAGAGGAGCAGAACAAGAAGAATTTGCTGAAGTGGAAAATAAATAAGAAGGTCAATCGAATTTATGGTGATTGGCTCGATGATTTTCCATTTCCAAGGTAG 948 0.4546 MLSPLPFAADEDSNGRWPQFPINNELFDSRSTFDHLPPFQAAQNIRKQSLRSLAIPPARMHHLQNPPTNRGGTSHIFYKTRPCAKFKMGTCRNGENCNFAHGEEDMRQPPPNWQALVGLRDEERPSGNWDDDQKIIHKMKLCKKYYNGEECPYGERCNFLHEDPSKFRDDAGRSRESSAISLVANGXSKSHLNGPNNSDNNKTVNSGCDGFRTNGKAPFWKTKLCSKWETTGQCPFGDKCHFAHGQAELQAPCGRGEAEAIGAQSIPINDITPINTASILDSKEEEQNKKNLLKWKINKKVNRIYGDWLDDFPFPR 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1094g0003 316 FunFam Zinc finger CCCH domain-containing protein 214 251 - -
Prci1094g0003 316 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 220 246 IPR000571 GO:0046872
Prci1094g0003 316 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Prci1094g0003 316 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 78 103 IPR000571 GO:0046872
Prci1094g0003 316 Gene3D - 133 165 - -
Prci1094g0003 316 Gene3D - 72 108 - -
Prci1094g0003 316 Gene3D - 213 251 - -
Prci1094g0003 316 ProSiteProfiles Zinc finger C3H1-type profile. 219 247 IPR000571 GO:0046872
Prci1094g0003 316 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Prci1094g0003 316 SMART c3hfinal6 77 103 IPR000571 GO:0046872
Prci1094g0003 316 SMART c3hfinal6 136 163 IPR000571 GO:0046872
Prci1094g0003 316 SMART c3hfinal6 219 246 IPR000571 GO:0046872
Prci1094g0003 316 MobiDBLite consensus disorder prediction 186 207 - -
Prci1094g0003 316 ProSiteProfiles Zinc finger C3H1-type profile. 77 104 IPR000571 GO:0046872
Prci1094g0003 316 SUPERFAMILY CCCH zinc finger 136 163 IPR036855 GO:0046872
Prci1094g0003 316 SUPERFAMILY CCCH zinc finger 218 250 IPR036855 GO:0046872
Prci1094g0003 316 FunFam Zinc finger CCCH domain-containing protein 72 108 - -
Prci1094g0003 316 SUPERFAMILY CCCH zinc finger 75 108 IPR036855 GO:0046872
Prci1094g0003 316 FunFam Zinc finger CCCH domain-containing protein 39 133 165 - -
Prci1094g0003 316 PANTHER CCCH ZINC FINGER/TIS11-RELATED 44 168 IPR045877 GO:0003729
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1094g0003 219 250 C3H Transcription Factor Family AT1G68200 59.375 7.01e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci1094g0003 zf-CCCH 1.9e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1094g0003 - - pcin:129320676 632.098