Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1055g0002 ATGGACAAAGGAGCGCCTCCTAGCCTCTTTGTTAATGATGGTTCCTTCATGGAAAGGTTCAAGCAACTTCAACAAGAGCAGGAGAAGGACAAAGATGCCAAATTAAAGGAGCCTAAACCGATTAAAATTGTATCAGGGTCTCTGACTTCTAATTTGACCATTAAAAAGAACCCTGTGAACTCTAAGGCTAATGACTCACAGAAAACTGCCCAGGCTAGCTCCAATGGAAAACTTGCTTTTAGTTTGAAACAGAAGTCAAAATTAGTCCCGCCACCTGTTGTGTTGAGTGCTGAAGAGGATGAAGAAGAAACAAATGCTGGTGATACTTCAAGTGATGTGCCATCAAAACGACAGAAGTTGAATAATGACGCTTGCACTGAGCAATCATCAAGACGGCTAGAAGTTGCACCTCCTTCCCCAAGTGACCCTACAGTGAAGAAAGTTGCTGACAAACTAGCAAGTTTTGTGGCGAAAAATGGAAGGCAATTTGAGGATGTCACACGTCAAAAAAATCCTGGAGATACGCCTTTCAAATTCTTATTTGATGAGAAATGTGCTGATTACAAATATTACCAACATCGGCTTGCTCAAGAAGAAAAGGCTCTTGCACAATCAAAGGAGTCACAGGAATCTCATAATGGTAGTACGAGCACCTCATCATCCAAATCAACAACTGGTTCTCAGAGAACATCTCAACAGCAATCAACTTACCAAATTCCTGCATCTGCTTTATATCAGACTGCTGATGAGCCTGGTGCAGTATCAAATGCTGATTCATTGGCACGGATGGAGTTCTACATGATGAAAGCTGCCCAGGAGGAGAGGAGGAGACAACCGAAGCAGTCAAAAGATGAGATGCCACCTCCTGCTTGTCTTCAAGCTCCTGCAAAAAAGGGACATCACATGGGTGATTACATCCCTCCAGAAGAACTTGAGAAGTTTTTAGCTACGTGCAATGATGCAGCGGCTCAAAAAGCTGCCAAGGAAGCTGCAGAGAAGGCAAAAATTCAGGCTGATAATGTGGGCCACAAGCTTTTGTCAAAAATGGGCTGGAAAGAAGGTGAGGGATTAGGGAGCTCTGGAAAGGGTATGTCAGATCCAATCATGGCAGGCAATGTTAAGATGAATAATTTGGGTGTTGGGGCTCAACAACCAGGGGAGGTGACTCCTGATGATGATATATATGAACAGTACAAGAAGCGGATGATGCTTGGTTATCGTTACAGACCCAACCCTCTGAATAATCCTCGCAAGGCATATTATTGA 1266 0.4344 MDKGAPPSLFVNDGSFMERFKQLQQEQEKDKDAKLKEPKPIKIVSGSLTSNLTIKKNPVNSKANDSQKTAQASSNGKLAFSLKQKSKLVPPPVVLSAEEDEEETNAGDTSSDVPSKRQKLNNDACTEQSSRRLEVAPPSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDEKCADYKYYQHRLAQEEKALAQSKESQESHNGSTSTSSSKSTTGSQRTSQQQSTYQIPASALYQTADEPGAVSNADSLARMEFYMMKAAQEERRRQPKQSKDEMPPPACLQAPAKKGHHMGDYIPPEELEKFLATCNDAAAQKAAKEAAEKAKIQADNVGHKLLSKMGWKEGEGLGSSGKGMSDPIMAGNVKMNNLGVGAQQPGEVTPDDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1055g0002 421 SMART surpneu2 146 200 IPR000061 GO:0003723|GO:0006396
Prci1055g0002 421 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 296 421 IPR040169 -
Prci1055g0002 421 MobiDBLite consensus disorder prediction 272 302 - -
Prci1055g0002 421 Pfam G-patch domain 339 382 IPR000467 GO:0003676
Prci1055g0002 421 MobiDBLite consensus disorder prediction 157 176 - -
Prci1055g0002 421 MobiDBLite consensus disorder prediction 23 148 - -
Prci1055g0002 421 SUPERFAMILY Surp module (SWAP domain) 133 200 IPR035967 GO:0003723|GO:0006396
Prci1055g0002 421 MobiDBLite consensus disorder prediction 44 81 - -
Prci1055g0002 421 ProSiteProfiles G-patch domain profile. 338 385 IPR000467 GO:0003676
Prci1055g0002 421 ProSiteProfiles SURP motif repeat profile. 148 191 IPR000061 GO:0003723|GO:0006396
Prci1055g0002 421 MobiDBLite consensus disorder prediction 23 39 - -
Prci1055g0002 421 SMART G-patch_5 336 383 IPR000467 GO:0003676
Prci1055g0002 421 MobiDBLite consensus disorder prediction 108 135 - -
Prci1055g0002 421 Gene3D Surp module 119 205 IPR035967 GO:0003723|GO:0006396
Prci1055g0002 421 Pfam Surp module 147 197 IPR000061 GO:0003723|GO:0006396
Prci1055g0002 421 MobiDBLite consensus disorder prediction 200 256 - -
Prci1055g0002 421 MobiDBLite consensus disorder prediction 207 243 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1055g0002 327 384 C2H2 Transcription Factor Family AT5G26610 43.103 1.61e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1055g0002 K13096 - gmx:100786213 592.423