Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1032g0001 ATGCTAGACAATAGTGCTAATTCTTCTGATGCGGCTTCCTCAGAAAATAATGGAGCGATCCTTCCCAAAAGAAAAAGAAGACCCCCAGGCACACCAGATCCAGATGCTGAGGTCGTGTGTTTGTCACCGAAGACCTTGTTGGAATCAGATAGATATGTGTGTGAGATCTGTAATCAAGGATTTCAAAGAGACCAGAATCTGCAGATGCACAGAAGAAGGCACAAGGTACCCTGGAAGTTGCTGAAAAGGGAGACTAGCAGCACGCAAGAGGTGAAGAAGAAGGTGTTTGTGTGCCCTGAGCCTACTTGTTTGCACCATAATCCTTGCCATGCTCTTGGAGATCTCGTGGGCATCAAGAAGCATTTTAGGAGGAAGCATAGTAATCACAAGCAGTGGGTTTGTGAGAAGTGTTCTAAAGGATATGCTGTTCAGTCTGATTACAAAGCTCACCTCAAAACCTGCGGTACCAGAGGCCATTCGTGTGACTGTGGTCGTGTCTTTTCCAGGGTTGAGAGTTTCATTGAACATCAAGACGCGTGCACTGGTCGAACAGCTTCTAGCACTAGTCCATCTAGTGAAGCCAATTTAGTTTCATTAATGCAAGGCTTGCCTGTGCCAAAACCACCCACTTCTCATAGACATAATAACTTAGAAGAACTCCAGCTCTTACGTTGTTCTTCTTCATCAGACGCTCTAGGAAACCGAGGCTCTGATCATGAGGAGGATAACAACCACGAAACTGATCAAACCCATCTGAAGCTTTCAATAGGGTCATTCAGTAACAACAATAAGAGCAACAAGAATGTTGCGAGTAATAATGAAGCGGAAGCGGAAGAAGCACCGAGGTTAAGGGAAGTGGGGCGGTTGAAAGAGTGCGCTAGTGAAGAGCTCAAGTTGGCGATGGCTGAAAAGGCATATGCAGAAGAAGCTAGAAGAGAGGCTAAGCGTGAGATAGAGATGGCCGAGTTAGAGTTTGGGAGAGCAAAGAGGATAAGGAAGGAAGCTCAGGAGGAGCTCGAGAAGGCTGAGGCTTTGAAGAAGCAAGCCATGATGAAGACGAGTTCCACTCTGATGCAAATTACTTGTCAGGCTTGTAAGCAACAGTTCCAATCCTCCATTCTTGCCGGGGTTTCATCAGAAGAGACATCTCTTGTGATGAGCTGCATGTCCTCACCCACCACTGAAGGAGAAGGAGATCAATAA 1203 0.4622 MLDNSANSSDAASSENNGAILPKRKRRPPGTPDPDAEVVCLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETSSTQEVKKKVFVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTGRTASSTSPSSEANLVSLMQGLPVPKPPTSHRHNNLEELQLLRCSSSSDALGNRGSDHEEDNNHETDQTHLKLSIGSFSNNNKSNKNVASNNEAEAEEAPRLREVGRLKECASEELKLAMAEKAYAEEARREAKREIEMAELEFGRAKRIRKEAQEELEKAEALKKQAMMKTSSTLMQITCQACKQQFQSSILAGVSSEETSLVMSCMSSPTTEGEGDQ 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1032g0001 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 74 IPR013087 -
Prci1032g0001 400 MobiDBLite consensus disorder prediction 1 37 - -
Prci1032g0001 400 SUPERFAMILY beta-beta-alpha zinc fingers 49 75 IPR036236 -
Prci1032g0001 400 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Prci1032g0001 400 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 363 IPR031140 -
Prci1032g0001 400 SMART c2h2final6 52 74 IPR013087 -
Prci1032g0001 400 SMART c2h2final6 96 126 IPR013087 -
Prci1032g0001 400 SMART c2h2final6 132 159 IPR013087 -
Prci1032g0001 400 MobiDBLite consensus disorder prediction 234 249 - -
Prci1032g0001 400 FunFam protein indeterminate-domain 12-like 31 102 - -
Prci1032g0001 400 Coils Coil 297 352 - -
Prci1032g0001 400 Gene3D Classic Zinc Finger 30 100 - -
Prci1032g0001 400 MobiDBLite consensus disorder prediction 1 16 - -
Prci1032g0001 400 MobiDBLite consensus disorder prediction 250 273 - -
Prci1032g0001 400 Gene3D Classic Zinc Finger 117 195 - -
Prci1032g0001 400 MobiDBLite consensus disorder prediction 228 282 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1032g0001 23 397 C2H2 Transcription Factor Family AT2G01940 57.037 2.47e-147 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci1032g0001 None None None