Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1012g0003 ATGGCATTTATGGCTTCAAATCAGACTTCTGGCGGAAACCATGCAGGGGCAATCAATGATGATTTATACAAGGAGTTATGGCGTGCCTGTGCTGGCCCCCTTGTCACTCTGCCTCGTGAAGGGGAGCGAGTTTACTATTTTCCCCAAGGTCACATGGAACAGCTTGAGGCCTCGATGCATCAGGGGTCTGACCAGCAAATGCCTTCTTTCAATCTGCCTTCTAAAATTCTGTGTAAGGTCGTAAATGTTCATCTACGGGCTGAGCCTGAAACAGATGAAGTCTATGCACAAATAACTTTGCTTCCTGAAGCTGATCAAAGTGAAGTGACAAGCCCTGATGATCCTCTTCCAGAGCTTCCTAGGTGCACAGTTCATTCCTTCTGCAAAACGCTTACTGCATCTGACACTAGCACTCATGGAGGTTTTTCTGTTCTTCGAAGACATGCGGATGATTGTCTGCCACCACTGGATATGTCCCAGCAGCCACCATGGCAAGAATTAGTTGCAACTGATTTACATGGGAATGAATGGCATTTTCGACATATATTTCGAGGGCAACCTAGGCGGCATTTGCTTACTACTGGATGGAGTGTGTTTGTAAGCTCCAAAAAATTGGTCTCTGGGGATGCTTTTATATTCCTAAGGGGTGAGAATGGAGAGCTGCGAGTTGGAGTTAGGCGGCTCATGAGACAGCAAAACAATATGCCATCTTCTGTCATATCCAGTCACAGTATGCATATTGGCGTTCTTGCAACTGCATCTCATGCCATTGCCACTGGAACACTGTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGATCAGAATTTATTGTGAGCGTCAACAAGTATCTTGAAGCTCGAAGTCATAAGCTTTCTGTTGGGATGAGATTCAAGATGAGATTTGAGGGTGATGATGTTCCTGAAAGAAGGTTTAGTGGCACAATTGTGGGTGTTGGAGACAATAACTTGACTGTTTGGCCTGATTCTGAGTGGCGATCATTGAAGGTGCAATGGGATGAACCATCATCAATTATACGCCCTGATAGAGTCTCACCTTGGGAATTAGAGCCACTTTTGGCCACCGCTCCTGCGAATGTTCAACCAATGCAAAGAAATAAGAGGCCCCGGCTTCCTGTTATTCCTCCAACAGTACCCGATTCTTCTTTGCATGGGGCATGGAAACCATCAAATGAATCCCCTTCCTTCTTTCGTGACTCACAACATGGACAGGATCTCTATCAATCATCTAAGTTCAATTCTTCTGCAACTAACTTTCTTGGTTTTGATGGGAACAAATCTAGGGGGACTGTTTCCGCCAATTCCATATATTGGTCTGACAGGATCGAGAACTCTACAGAGCATTTTTCACCTTTAGCTTTTAAAGAATCTGGTGAAAAGAAACAAGGGACTGGAAATGGCTGTAGGCTCTTTGGGATTCAGCTACTTGAGAATTCCAATGTTGAAGAAAGTATGCCGAGAGTCACTATGTCAGAGAGGGTGGGGGATGATAAGTCAGTTCCATGTGTGGATGCTGAGCCTGACCAGCTTTCTGAGCCATCAAATGTCAATGGATCTTATATCCCATCAGTGAGTTGTGATGCTGACAAATCAAGTCTTCAGGCTCCTCAAGAATCACAAAGCAGGCAAATAAGGAGCTGCACTAAGGTTCACATGCAAGGAATGGCTGTTGGTAGGGCTGTGGATTTGTCACGGTTTGATGGATATGAGGATCTGCTTAAAAAATTGGAGGAAATGTTTGACATCAAGGGCGAGTTGGATAAATCCGTGAAGAAATGGCAGGTTGTCTATACTGATAATGAAGATGATATGATGATGGTTGGAGATGATCCATGGCATGAGTTCTGCACTGTGGTGAGGAAAATATTCATCTACACACCAGAGGAGGTGAAGAAGCTCTCACCGAAAGTAGGGCTTCCAATCAATGAAGAAGTTAAGCCAAGCAAGGTGGATTCTGAAGCTGCAGTCAATAGTGAGGACCAGTCATCCACGGTGGGGCATAGCTGCTGA 2028 0.4492 MAFMASNQTSGGNHAGAINDDLYKELWRACAGPLVTLPREGERVYYFPQGHMEQLEASMHQGSDQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPELPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVSGDAFIFLRGENGELRVGVRRLMRQQNNMPSSVISSHSMHIGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEARSHKLSVGMRFKMRFEGDDVPERRFSGTIVGVGDNNLTVWPDSEWRSLKVQWDEPSSIIRPDRVSPWELEPLLATAPANVQPMQRNKRPRLPVIPPTVPDSSLHGAWKPSNESPSFFRDSQHGQDLYQSSKFNSSATNFLGFDGNKSRGTVSANSIYWSDRIENSTEHFSPLAFKESGEKKQGTGNGCRLFGIQLLENSNVEESMPRVTMSERVGDDKSVPCVDAEPDQLSEPSNVNGSYIPSVSCDADKSSLQAPQESQSRQIRSCTKVHMQGMAVGRAVDLSRFDGYEDLLKKLEEMFDIKGELDKSVKKWQVVYTDNEDDMMMVGDDPWHEFCTVVRKIFIYTPEEVKKLSPKVGLPINEEVKPSKVDSEAAVNSEDQSSTVGHSC 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1012g0003 675 ProSiteProfiles PB1 domain profile. 551 644 IPR000270 GO:0005515
Prci1012g0003 675 FunFam Auxin response factor 290 362 - -
Prci1012g0003 675 Pfam AUX/IAA family 598 641 IPR033389 -
Prci1012g0003 675 Pfam AUX/IAA family 543 587 IPR033389 -
Prci1012g0003 675 Gene3D - 290 362 - -
Prci1012g0003 675 Gene3D - 546 640 - -
Prci1012g0003 675 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Prci1012g0003 675 FunFam Auxin response factor 546 640 - -
Prci1012g0003 675 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Prci1012g0003 675 SMART B3_2 127 229 IPR003340 GO:0003677
Prci1012g0003 675 CDD B3_DNA 125 227 IPR003340 GO:0003677
Prci1012g0003 675 MobiDBLite consensus disorder prediction 654 675 - -
Prci1012g0003 675 MobiDBLite consensus disorder prediction 364 407 - -
Prci1012g0003 675 MobiDBLite consensus disorder prediction 660 675 - -
Prci1012g0003 675 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Prci1012g0003 675 SUPERFAMILY CAD & PB1 domains 554 628 - -
Prci1012g0003 675 MobiDBLite consensus disorder prediction 390 407 - -
Prci1012g0003 675 FunFam Auxin response factor 125 229 - -
Prci1012g0003 675 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 640 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci1012g0003 675 Gene3D - 124 229 IPR015300 -
Prci1012g0003 675 SUPERFAMILY DNA-binding pseudobarrel domain 116 256 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1012g0003 4 674 B3 DNA Binding Superfamily AT1G59750 69.688 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci1012g0003 AUX_IAA 5.2e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1012g0003 K14486 - gmx:100815450 1128.24