Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1001g0002 ATGCCATGCCTCTTTGTTCAGGCGGTGGTAGGAGGGATTAGGAAGGCATATGAAATATCTTCTATATTTTTTTCTTTCAACCAAAATAATATGTCGAATCCTAAGCCCCCGCGCGAGCCTCTGACAGCCAGTTTGGTCGATTCGCCCCTTCGGTATCACACTGCGAATACTGCGGAATCAGATGGACAGTCCTCAGTCAGAAGTACGAAGTACTACCCACCTGCGAACGCTCTCTATGAGGACCTCGCTAGCAGTTCGGACTTTTTCTGGAATAACCTTCAGGATTTCCACAAATCCTTAGGCACCACATTAAAAGTTCCAACTATAGGAGGAAAGCCACTAGATCTATATCGCCTTTTTATTGAAGTAACTTCTCGTGGTGGGCTTGAAAAGGTAATTGGAGATCGTAAATGGAAGGAAGTGATTACAGTCTTCAAATTCCCAGACACTGTAACCAGCGCATCATTTGCATTGCGCAAATACTATCAATCATTGCTTTATGACTTTGAGCAGGTTTATTATTTTCGCAAGCAAGCCCCTTCTTTTTCAATGCCTGATTCTGGTAGCAGGAGCATATTGAGCTCAAAGGAAGTTGATGCTTTGAATGATTTTTTACCAGTTTGTCCGCTCCAGCAGCAGCTTGGCTCTTTGGTGCCTGGTACCATCGACTTGAAATTTGATGGTGGGTATGTAGTCACTGTGAATCTGGGTTCTGACCAGCTGAAAGGCGTGCTGTATCACGTTCCTCTCAATGCATCACAGACTTCTGCATCCATACCTGCTTCTGTGAATCGAAAGAGATCAAGGTTGGGTTCACATGATCCTTCTCGGCCCAAATCAAACAGGAGTGGCTACAATTTCTTCTTTGCTGAACACTATGCCAGGTTGAAGCCTTTATACTATGGGCAAGAGAGAGCAATTAGTAAGAAGATTGGGTTTTTATGGAACCATCTCACTGATGCAGAAAGACAGATATATCAGGAGAAGGGAAGAAGAGATAAGGAGAGATACAGGACTGAAATGGAGGAATACAAAGCATCCAATAATTTGAGTCCTCAGCAGTAG 1065 0.4376 MPCLFVQAVVGGIRKAYEISSIFFSFNQNNMSNPKPPREPLTASLVDSPLRYHTANTAESDGQSSVRSTKYYPPANALYEDLASSSDFFWNNLQDFHKSLGTTLKVPTIGGKPLDLYRLFIEVTSRGGLEKVIGDRKWKEVITVFKFPDTVTSASFALRKYYQSLLYDFEQVYYFRKQAPSFSMPDSGSRSILSSKEVDALNDFLPVCPLQQQLGSLVPGTIDLKFDGGYVVTVNLGSDQLKGVLYHVPLNASQTSASIPASVNRKRSRLGSHDPSRPKSNRSGYNFFFAEHYARLKPLYYGQERAISKKIGFLWNHLTDAERQIYQEKGRRDKERYRTEMEEYKASNNLSPQQ 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1001g0002 354 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 278 345 IPR009071 -
Prci1001g0002 354 MobiDBLite consensus disorder prediction 329 354 - -
Prci1001g0002 354 Gene3D High mobility group box domain 262 354 IPR036910 -
Prci1001g0002 354 SMART ARID_2 80 170 - -
Prci1001g0002 354 ProSiteProfiles ARID domain profile. 83 174 IPR001606 GO:0003677
Prci1001g0002 354 SMART hmgende2 277 346 IPR009071 -
Prci1001g0002 354 MobiDBLite consensus disorder prediction 329 343 - -
Prci1001g0002 354 MobiDBLite consensus disorder prediction 257 281 - -
Prci1001g0002 354 SUPERFAMILY HMG-box 266 347 IPR036910 -
Prci1001g0002 354 Pfam ARID/BRIGHT DNA binding domain 88 170 IPR001606 GO:0003677
Prci1001g0002 354 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 64 349 - -
Prci1001g0002 354 SMART bright_3 84 175 IPR001606 GO:0003677
Prci1001g0002 354 SUPERFAMILY ARID-like 83 185 IPR036431 GO:0003677
Prci1001g0002 354 Gene3D - 69 188 IPR036431 GO:0003677
Prci1001g0002 354 Pfam HMG (high mobility group) box 278 345 IPR009071 -
Prci1001g0002 354 CDD ARID_HMGB9-like 85 170 IPR045303 GO:0003677
Prci1001g0002 354 CDD HMG-box_AtHMGB9-like 278 344 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1001g0002 63 349 ARID Transcription Factor Family AT3G13350 48.860 7.88e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Prci1001g0002 ARID 2.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1001g0002 - - pcin:129299025 716.457