Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1001g0001 ATGCCATGCCTCTTTGTTCAGGCGGTGGTAGGAGGGATTAGGAAGGCATATGAAATATCTTCTATATTTTTTTCTTTCAACCAAAATAATATGTCGAATCCTAAGCCCCCGCGCGAGCCTCTGACAGCCAGTTTGGTCGATTCGCCCCTTCGGTATCACACTGCGAATACTGCGGAATCAGATGGACAGTCCTCAGTCAGAAGTACGAAGTACTACCCACCTGCGAACGCTCTCTATGAGGACCTCGCTAGCAGTTCGGACTTTTTCTGGAATAACCTTCAGGATTTCCACAAATCCTTAGGCACCACATTAAAAGTTCCAACTATAGGAGGAAAGCCACTAGATCTATATCGCCTTTTTATTGAAGTAACTTCTCGTGGTGGGCTTGAAAAGGTAATTGGAGATCGTAAATGGAAGGAAGTGATTACAGTCTTCAAATTCCCAGACACTGTAACCAGCGCATCATTTGCATTGCGCAAATACTATCAATCATTGCTTTATGACTTTGAGCAGATCAGTTGTTTCATACGATCAGATTCTGGTAGCAGGAGCATATTGAGCTCAAAGGAAGTTGATGCTTTGAATGATTTTTTACCAGTTTGTCCGCTCCAGCAGCAGCTTGGCTCTTTGGTGCCTGGTACCATCGACTTGAAATTTGATGGTGGGTATGTAGTCACTGTGAATCTGGGTTCTGACCAGCTGAAAGGCGTGCTGTATCACGTTCCTCTCAATGCATCACAGACTTCTGCATCCATACCTGCTTCTGTGAATCGAAAGAGATCAAGGTTGGGTTCACATGATCCTTCTCGGCCCAAATCAAACAGGAGTGGCTACAATTTCTTCTTTGCTGAACACTATGCCAGGTTGAAGCCTTTATACTATGGGCAAGAGAGAGCAATTAGTAAGAAGATTGGGTTTTTATGGAACCATCTCACTGATGCAGAAAGACAGATATATCAGGAGAAGGGAAGAAGAGATAAGGAGAGATACAGGACTGAAATGGAGGAATACAAAGCATCCAATAATTTGAGTCCTCAGCAGTAG 1044 0.4377 MPCLFVQAVVGGIRKAYEISSIFFSFNQNNMSNPKPPREPLTASLVDSPLRYHTANTAESDGQSSVRSTKYYPPANALYEDLASSSDFFWNNLQDFHKSLGTTLKVPTIGGKPLDLYRLFIEVTSRGGLEKVIGDRKWKEVITVFKFPDTVTSASFALRKYYQSLLYDFEQISCFIRSDSGSRSILSSKEVDALNDFLPVCPLQQQLGSLVPGTIDLKFDGGYVVTVNLGSDQLKGVLYHVPLNASQTSASIPASVNRKRSRLGSHDPSRPKSNRSGYNFFFAEHYARLKPLYYGQERAISKKIGFLWNHLTDAERQIYQEKGRRDKERYRTEMEEYKASNNLSPQQ 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1001g0001 347 SMART ARID_2 80 170 - -
Prci1001g0001 347 Pfam ARID/BRIGHT DNA binding domain 88 170 IPR001606 GO:0003677
Prci1001g0001 347 Gene3D High mobility group box domain 255 347 IPR036910 -
Prci1001g0001 347 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 271 338 IPR009071 -
Prci1001g0001 347 MobiDBLite consensus disorder prediction 322 347 - -
Prci1001g0001 347 SMART bright_3 84 175 IPR001606 GO:0003677
Prci1001g0001 347 Pfam HMG (high mobility group) box 271 338 IPR009071 -
Prci1001g0001 347 ProSiteProfiles ARID domain profile. 83 174 IPR001606 GO:0003677
Prci1001g0001 347 SMART hmgende2 270 339 IPR009071 -
Prci1001g0001 347 CDD HMG-box_AtHMGB9-like 271 337 - -
Prci1001g0001 347 Gene3D - 69 184 IPR036431 GO:0003677
Prci1001g0001 347 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 64 342 - -
Prci1001g0001 347 SUPERFAMILY ARID-like 83 174 IPR036431 GO:0003677
Prci1001g0001 347 MobiDBLite consensus disorder prediction 322 336 - -
Prci1001g0001 347 CDD ARID_HMGB9-like 85 170 IPR045303 GO:0003677
Prci1001g0001 347 SUPERFAMILY HMG-box 259 340 IPR036910 -
Prci1001g0001 347 MobiDBLite consensus disorder prediction 252 274 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1001g0001 63 342 ARID Transcription Factor Family AT3G13350 49.013 1.42e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Prci1001g0001 ARID 2.6e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1001g0001 - - pcin:129299025 681.789