Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1000g0001 ATGGCCACCTCCCAGCATCGCTGCGTTTTTGTTGGGAACATACCGTATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGGCCTGTAGTGTCATTCAGGTTAGTAATCGATAGGGAAACTGGAAAACCAAAAGGTTATGGGTTCTGTGAATATAAGGATGAAGAGACAGCTTTAAGTGCTCGTCGCAACCTTCAGGGTTATGAGATTAATGGGCGGCAATTGCGTGTTGATTTTGCTGAAAATGACAAAGGTGCTGACAGAAATAGAGAACAGGGTCGTGGTGGGCCTGGATTGGCAACAAATGTTGACCATCAGAAACAACTAGCTGGGCCTGTTGTCCATGGGGAAGCTGCTCACCATCAACCTATTGGTCTTCATATTGCTATAACAGCTGCAACCGTCATGGCAGCAGCTCTAGGAGGGCCTCAATCTGGCATCCCGGCAAATCAAAATGGTTTGCAGGGTCAGTCTGGATTGACCCATGACCCTTTAACTCTGCATCTGGCCAAACTATCCAGGAATCAGTTGACTGAGATCATCTCTGAGCTCAAGGCAATGGCTACACATAACAAGGAGTCAGCTCGTCAGTTGTTGCTTTCTAGACAGCAGTTGCCTAAGGCTCTTTTTCAGGCGCAGATAATGCTAGGAATGGTGACCCCGCAAGTGTTACAAATGCCAAACCTTAGGCAAGTTGCAGGTGAAACCTCACAGCCTCCAGTAGATGAAAGCCAGCTAAGTCAGTCAGCAGTTCTTCAAACGCTATCTGGGCTGCCTTCTCATGCGCAGATCAAGTTGCAGTCTAGCTTGATACCCAATAGTCAAGAAGCTCAAGTCGGCTCTTTACATCATAATTCTTTGGTTCCTAATCAACTAACTGCACACGCAAAGCCTCCTTTGCAGCCTCGAATGCTGCTTCCACAACATTTAAGCAACCCTTTGCAGCCAGGGCATTCTAGTTCATCACTTCCTTCTGTTCGCCCACAGTCTTTATTCAGTTTGCCTGTTAGACCACCAAATCAGCCCAGTTTGTCTATTGGACCACCAGCTCAGCTGGCAACATCAACTTCTCTGAATCAGCAAATGCATTTGTTGCAGCATTCAGGGAAGATTGGTAACTCAAGTGTAGGACAAAATATTTGGATGATTCGTCCAGATGCAAGCTTTCAGCCTGGCCCATCCATTTCATCAGGCATTCCTCAGTCAATTGGTCGGGAAGCTGACAGGTCAGCTAAAGTTATTGAAGATTCTAGTTGGGCCAAGAAAAGTAGTCCATATTCAAACATTCCTCATGGATCAGGAGAGAAAGCAAACGAGTCTTCAGAACCATTTAGCCATCCTGCAAAGCTGATTAAATTGGATGATGGAAGGAACTCCTCTTTCTCCACAGGAGTCACAAATGCGCCTGTTTCCAAGGGATCTTCCCAAGTTCTTGGAAGTGGCTCATTGCCTGTAAATGCATCTTCCAAATCAGAAGCGCGATACCCTGAGCAACAATCCTCTCAGCCTCAGCTTCCACCTGACGTGGAATCGGTTTTACTGCAACAAGTATTGAGTCTTACGCCGGAGCAATTGAGTTCCTTGCCACCGGAGCAGCAACAGCAGGTGTTACAGCTTCAGCAGGCTCTCCGGCGAGACCAGATCCAGCCCTCATAG 1665 0.4721 MATSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLATNVDHQKQLAGPVVHGEAAHHQPIGLHIAITAATVMAAALGGPQSGIPANQNGLQGQSGLTHDPLTLHLAKLSRNQLTEIISELKAMATHNKESARQLLLSRQQLPKALFQAQIMLGMVTPQVLQMPNLRQVAGETSQPPVDESQLSQSAVLQTLSGLPSHAQIKLQSSLIPNSQEAQVGSLHHNSLVPNQLTAHAKPPLQPRMLLPQHLSNPLQPGHSSSSLPSVRPQSLFSLPVRPPNQPSLSIGPPAQLATSTSLNQQMHLLQHSGKIGNSSVGQNIWMIRPDASFQPGPSISSGIPQSIGREADRSAKVIEDSSWAKKSSPYSNIPHGSGEKANESSEPFSHPAKLIKLDDGRNSSFSTGVTNAPVSKGSSQVLGSGSLPVNASSKSEARYPEQQSSQPQLPPDVESVLLQQVLSLTPEQLSSLPPEQQQQVLQLQQALRRDQIQPS 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1000g0001 554 FunFam Cleavage stimulating factor 64 1 116 - -
Prci1000g0001 554 Pfam Transcription termination and cleavage factor C-terminal 516 548 IPR026896 GO:0031124
Prci1000g0001 554 Pfam Hinge domain of cleavage stimulation factor subunit 2 164 228 IPR025742 -
Prci1000g0001 554 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
Prci1000g0001 554 MobiDBLite consensus disorder prediction 315 353 - -
Prci1000g0001 554 Gene3D - 155 230 - -
Prci1000g0001 554 MobiDBLite consensus disorder prediction 306 353 - -
Prci1000g0001 554 FunFam Cleavage stimulating factor 64 155 230 - -
Prci1000g0001 554 Gene3D - 510 552 IPR038192 -
Prci1000g0001 554 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Prci1000g0001 554 SMART rrm1_1 8 81 IPR000504 GO:0003723
Prci1000g0001 554 MobiDBLite consensus disorder prediction 392 447 - -
Prci1000g0001 554 MobiDBLite consensus disorder prediction 465 513 - -
Prci1000g0001 554 MobiDBLite consensus disorder prediction 423 443 - -
Prci1000g0001 554 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 550 - -
Prci1000g0001 554 FunFam Related to Cleavage stimulation factor 507 549 - -
Prci1000g0001 554 MobiDBLite consensus disorder prediction 83 106 - -
Prci1000g0001 554 Gene3D - 1 112 IPR012677 -
Prci1000g0001 554 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Prci1000g0001 554 CDD RRM_CSTF2_RNA15_like 7 83 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1000g0001 9 148 Eukaryotic Initiation Factors Gene Family AT1G71770 29.286 1.13e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1000g0001 K14407 - gmx:100806489 646.351