LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral992g00005	ATGCTTCAACGTCCTAATAATCTCTTTTTTCTCTTGGTGACCTTCTTCATATTCTGGTCAGGCTGGACTCTAAACGGCGTCGTTTCAGACCCAGAGACCAATCTTCTGCACAGTGAATGCAGCCCGTTCTATGAATACGTCCCATCCAACTTCTCGACGTTCAGCGAAAACCTCAACACAACGTTTAGAGAAATCCGAGGGCAGATCGTGACTCAGAACAAGTACTTCGCGACGGCGCAGCAAGGGGGCGGAAATAACCCGGTTTCCACCATTTTCCGGTGCAGAAATTACCTCTCCATCCCCGACTGTGCCGCCTGCTTCGACGTCGCTTCTGTTCAGATCGGCAACTGCTCCGGCGGAGCAGACGGTGCCCGTGTCGTCTGCGACGGCTGTTTCCTCAGGTATGAGACGAGTGCCTTCTTTGACCAAACGACAGCGACTTTTAATGCCGTTTCATGTGGTGGGGATCAGACTAAAGGAGAAGCCTTTACATTTACTTCATCTGTGCAACAAGTGTTGATGAATCTCCAAACGACAACACCAACCATCACTGGCTTTCATGCAGCTACCAAAACCCAAGTGCCTAATAATGGTCCAATTATATATGCCTTTGCTCAATGTATTGAAACTGTCACACAGAGTGGTTGCTCCAATTGCTTAAACACTGCGTCTAGCAATATGCCAACTTGTCTTCCCAATTCAGGTGGTAAGGCTTTTGCTGATTGGTGTTTCATGAGATACTCCACCACTTCCTTCTTTCCTGATAACCAGACCATCTCTATCACACTCTTGAAGAAACAAGGTTCAAGCAAGAAAGGGTATATTATTGGTGGTGTTGTTGGAGGAGTAGCTTTTCTTCTGATCCTTTTTGCTTTATGTGCCTGGTTCAAACGACCAAAAATTTCTAAGAGAGTTCCTACAGAAGAGATAACTGGAGCAAGCAAGTTAAACCGCCCAGTTACTTACAGTTATAAGGATTTGAAGTTGGCAACCAAGAATTTTAGAGAAGAAAATAAACTTGGAGAAGGAGGGTTTGGTGTTGTATACAAGGGTACTCTGAAAAGTGGGAAAGTAGTTGCAATCAAGAAATTAAAGTTTCGCCAATTCACAAGGATGGAGGAAGAGTTTGAGAGTGAAGTGAAGTTGATAAGTAATGTTCATCATCTAAATCTTGTTCGACTTCTAGGATGTTGCAGTGAAGGACAAAACAGAATTCTTGTTTATGAATACATGAAAAATAATAGTCTCGACAGGTACCTATTTGGTAAAGAGAAGGGTTCTCTCAACTGGAAGCAAAGGTGTAACATAATTTTAGGAACAGCAAAAGGGTTGGCTTACCTATATGAGGAGTTTCATATTTGTATCATACATAGAGATATAAAGACAAACAACATCCTTTTAGATGATAATCTACAGCCTAAAATTGCTGATTTTGGATTGGCAAGGCTTTTGCCCGAGGACAAATCTCATCTCAACACAAAATTTGCAGGAACATTAGGATACACAGCACCTGAATATTTTATTCATGGCTGA	1533	0.4253	MLQRPNNLFFLLVTFFIFWSGWTLNGVVSDPETNLLHSECSPFYEYVPSNFSTFSENLNTTFREIRGQIVTQNKYFATAQQGGGNNPVSTIFRCRNYLSIPDCAACFDVASVQIGNCSGGADGARVVCDGCFLRYETSAFFDQTTATFNAVSCGGDQTKGEAFTFTSSVQQVLMNLQTTTPTITGFHAATKTQVPNNGPIIYAFAQCIETVTQSGCSNCLNTASSNMPTCLPNSGGKAFADWCFMRYSTTSFFPDNQTISITLLKKQGSSKKGYIIGGVVGGVAFLLILFALCAWFKRPKISKRVPTEEITGASKLNRPVTYSYKDLKLATKNFREENKLGEGGFGVVYKGTLKSGKVVAIKKLKFRQFTRMEEEFESEVKLISNVHHLNLVRLLGCCSEGQNRILVYEYMKNNSLDRYLFGKEKGSLNWKQRCNIILGTAKGLAYLYEEFHICIIHRDIKTNNILLDDNLQPKIADFGLARLLPEDKSHLNTKFAGTLGYTAPEYFIHG	510

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral992g00005	510	Gene3D	Transferase(Phosphotransferase) domain 1	411	510	-	-
	Pral992g00005	510	ProSitePatterns	Protein kinases ATP-binding region signature.	340	363	IPR017441	GO:0005524
	Pral992g00005	510	Pfam	Protein kinase domain	334	506	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral992g00005	510	SMART	serkin_6	334	508	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral992g00005	510	FunFam	Cysteine-rich receptor-like protein kinase 2	148	252	-	-
	Pral992g00005	510	ProSiteProfiles	Gnk2-homologous domain profile.	35	140	IPR002902	-
	Pral992g00005	510	Gene3D	-	146	252	IPR038408	-
	Pral992g00005	510	Gene3D	-	33	140	IPR038408	-
	Pral992g00005	510	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	455	467	IPR008271	GO:0004672\|GO:0006468
	Pral992g00005	510	ProSiteProfiles	Protein kinase domain profile.	334	510	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral992g00005	510	Gene3D	Phosphorylase Kinase; domain 1	305	410	-	-
	Pral992g00005	510	FunFam	Cysteine-rich receptor-like protein kinase 2	301	410	-	-
	Pral992g00005	510	Pfam	Salt stress response/antifungal	49	137	IPR002902	-
	Pral992g00005	510	Pfam	Salt stress response/antifungal	159	249	IPR002902	-
	Pral992g00005	510	FunFam	Os07g0541700 protein	411	498	-	-
	Pral992g00005	510	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	93	510	-	-
	Pral992g00005	510	SUPERFAMILY	Protein kinase-like (PK-like)	316	510	IPR011009	-
	Pral992g00005	510	ProSiteProfiles	Gnk2-homologous domain profile.	147	252	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral992g00005	Pral-Chr992	42881	47815	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral992g00005	1	510	Receptor kinase-like Gene Family	AT1G70520	35.521	9.06e-93	294

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pral992g00005		Pkinase	5.1e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral992g00005	-		-	pcin:129300003	651.744