Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral986g00001 ATGAGTGAGGTAAATTTGCTGAAGAAAAGGAAGTTGTCTCAAAACAGTGACGACGAAGACAGGGGTAATTTTTGCGGCACGCACATGACTGAGGAGCGATACCGATCAATGCTTGGGGAACATATGCAAAAATACAAGAGGAGGTATAAAGATACCTCATCCAGTCCTGCCCAAAATCGTGTTAGTGCTCACCTTCTTAAAAGTAACACAGGTTTGAAAGCGCGAAAGTTGTTGAATGAGCACCGAAGAGGAATACATGCTCTGGAGACAACATCTGAGTGGCCTAATGATATTAATCCTCAGAAACCTGTAAACTACCGTGATGCAGAATTCAGACCGCAATATGGATCTGATAGAACTATCTATGAACCAGCTTCGTTAGATATTGGAGATGGCGTTACTTACAAAATTCCTCCTACTTATGATCAGTTAGCAGCAATGATGAACCTTCCAAGTTTCTCGGATATCCTAGTTGAGGAATTTCACTTAAAGGGTACCTTGGATTTGGGGTCCTTGGCGGCAATGATGGCTTCTGATAAGAGGGGTGGAACTAGAAACCGAGCAGGCATGGGGGAAACCTTACCTCAATATGATTCACTTCAGGCACGATTGAAGGCCATGTCAGCTTCTAATTCACCTCATCAATTTAGTCTGAAAGTATCTGACATTGGTTTGAATTCTTCCATCCCAGAGGGAGCTGCTGGAAATATTAAGCGATCTATTTTATCCGAGGGTGGTGTATTGCAGGTTTATTATGTGAAGGTTTTAGAGAAAGGTGACGCGTATGAGATCATTGAAAGAAGCCTACCTAAGAAGCAAAAGGTAAAGAAAGACCCTTCTTTGATTGAGAAGGAGGAAATGGAAAGAATTGGAAAAGTCTGGGTAAATATTGTAAGAAGAGAGATACCAAAGCACTATAGATTTTTTACTGGTTTCCATCGAAAGCAACTTGCTGATGCCAAGAGGTTCTCAGAGAACTGCCAAAGAGAGGTCAGAATGAAAGCGAGTAGATCACTTAAATTCATGAAGAGTGCACCCATTCGCACTCGAAAACTAGCTAGAGATGTCTTGCTGTTCTGGAAACGATCAGATAAGGAGATGGCAGAATTGAGGAAAAAAGAGGAGAAAGAAGCTGCAGAAGCTTTGAGGCGTGAACAGGAGCTTCGGGAAGCAAAGAGGCAGCAGCAAAGGCTGAATTTCCTTATACAGCAAACTGAGCTATACAGTCATTTTATGCAGAACAAGTCGAACTTACTGTCCTCTGATGTTTTACCTACAGTAGATGAAAAAGCAGATGATCAAGATGCAGAAACTGGCTCTTCAGGTGCTGGGCCTAGCGAGGAGGAAGATCCTGAAGAGGCTGAACTGAAGAAGGAAGCTTTGAAGGCAGCTCAAGAAGCTGTCTCTAAGCAGAGAAAGTTGACGAGCGCTTTTGATAGTGAATGCTTGAGGCTGCGTCAGGCTGATGAAACTGATGCACTTTCACAGGAAGTTGCAGGAGCAAGTAACATTGATTTGCAAACCCCTTCAACCATGCCTGTGGCATCAACAGTTCGGACACCAGAAATGTTTAGAGGCCGTCTTAAAGAATATCAGCTAAAAGGTCTTCAGTGGTTAGTTAATTGTTATGAGCAGGGTCTGAATGGTATACTTGCTGATGAGATGGGACTTGGAAAGACCATTCAAGCCATGGCTTTTTTAGCCCATTTAGCTGAGGAGAAAAATATATGGGGACCATTTTTGGTTGTTGCACCTTCATCAGTATTGAACAATTGGAAAGAAGAACTTGAGCGCTTCTGCCCTGAAATGAAAGCTCTTCCTTACTGGGGTGGGCTTCATGAGCGAACAGTACTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGCAGGGAAGCGAAATTCCACATTCTCATTACAAGCTACCAGCTAATAGTATCTGATGAGAAGTATTTTCGGCGTGTGAAATGGCAGTACATGGTATTAGATGAAGCTCAGGCAATTAAAAGTTCAAACAGTATAAGATGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGCCTGCTGCTGACCGGTACACCCATTCAAAATAATATGGCAGAATTATGGGCTCTTCTGCACTTCATTATGCCAACTTTATTTGATAACCACGAACAATTTAATGAATGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGAGGTACTTTGAATGAACATCAACTTAACAGACTGCATTCTATTCTAAAGCCTTTCATGCTGCGACGAGTTAAAAAAGATGTAGTATCCGAACTGACTAGAAAAATAGAGGTTACAGTGCACTGCAAGCTGAGTTCTCGGCAGCAAGCTTTCTATCAAGCAATCAAGAATAAAATATCTCTTGCTGATTTGTTTGATAGTAATCGTGGGCAGCTCAACGATAAGAGAATTGATAATTTAATGAATATTGTTATTCAACTACGAAAGGTTTGCAACCATCCGGAGTCGTTTGAGAGGAGCGAGGGAACCACATTCTATAATTTTGCAGAGATTCCAAGTTCCTTTCCGCCTCCTCCATTTGGGGAGTTGGAGGATGTATACTATGCTGGGGGTCACAATCCAATATCATACAAGATGCCAAAACTTGTCCATCAAGAAATCATGCAAGGTTCTAAATTGCTTAATTCAACAATTGCTCGTGGTGTTAGCAGAGAATTTTTTCAAAGACATTTTAATATTTACAGGCCGGAGAATGTTTTTCAATCCATCTTCTCTGAAGGGAATAAATCAAATGCGTCATTTATGAAAAGTGGAACTTTTGGTTTTACCCATTTGATGGATTTGTCCCCACAGGAGGTGATGTTTTCAGCTACTGGTTCTTTTATGGAGCAAGTACTGTTTTCTATCGTAAGATGGGAACAGAAATTTATCAATGAAGTTGTGGACTTCGTAACGGAGACTGTAGATAATGATCCTGAATACGGTTACCTTGAAGCAGGAAAAGTGAGGGCTGTTTCCCGAATGTTATTGGTGCCAACAAAATCTGAGACTAAGATTTTTCAAAGAAGATTTGCTACTGGCCCCAGCCATGCCCCTTTTGAGGCATTGGTTGTCACATATGAAGATAGAATTATATCCAATGCAAGGCTTATTCACTCAGCATACACATATATCCCTCGGACTAGAGCTCCACCAATTGTTGCCCACTGCTCAGACCGAAGCTTCTCCTATAAAACACTGGAAGAGTTGCATGACCCTTGGGTCATGAGGTTGCTTGTGGGATTTGCACGTACATCTGAGTTTAATGGACCTAGAAAGCCAGATGGTCCTCCCCATCATTTAATTCAAGAGATTGATTGTGAACTAACAGTTGCACAGCCTGCTCTTCAGTTAACCTACAAAATTCTAGGTTCGTCTCCCCCCATGCAAAATTTTGACCCAGCGAAACTGATCACTGACTCTGGGAAGCTTCAAACGCTGGACATATTATTAAAACGCTTGCGGGCTGAAAATCACCGTGTTCTCTTGTTTGCTCAGATGACTAGGATGCTGAATATTCTTGAGGACTACATGAACTACAGAAAATATAGATATTTTAGGCTTGATGGATCGACATCTATTCAGGACCGCAGAGACATGGTTAGAGACTTCCAGCAGAGGAATGATGTTTTTGTGTTCTTACTTAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACGGCTGCTGACACAGTAATCTTTTATGAGAATGATTGGAATCCCACGATGGATCAGCAGGCAATGGACAGAGCTCATCGAATCGGTCAAACAAAAGATGTCACTGTGTACAGACTCATATGCAAAGAGACAGTTGAAGAGAATATTCTTCTTAGAGCAAGTCAAAAAAGCACTGTACAGAACCTCGTCATGACTAGTGGTTCTGCTGGTGATGTTTTTGTTGCTGAGGATATTGTGTCTTTGCTTCTGGATGATGCGCAGTTGGAGCAGAAATTCAACGGAGTTCCTCTTCAGGTAAATGATAAGCAAAAGAAGAAACAAACGGTGAAGGTTATACGGGTGAATGAAGAAGGAGATGCGACCCTGGAAGATCTAACAGACTCGGGAGCACAGCGCCCACATAATGATATTTTTCTTGATCCAGAGGGACCAAAGCCCAGTAATAAAAAGAGAAAAGCTGCCTCTGTCAAGCAAACCGCATCAAGGGCAAGGAATTTTCAGAAGATTAATGAGCTTAATAGGACAATGCCAACGGAGTATGAGTTGTATGATGATCTAGCGGTCCAGAAACCCAAGAGACCAAAGAAGGCAAAGAAAGTTGGGAATGACAAGTGTGACGACCCTTCTGCTGGAGCAGACCGAATAGGCACCATTTTCACGTGA 4359 0.4194 MSEVNLLKKRKLSQNSDDEDRGNFCGTHMTEERYRSMLGEHMQKYKRRYKDTSSSPAQNRVSAHLLKSNTGLKARKLLNEHRRGIHALETTSEWPNDINPQKPVNYRDAEFRPQYGSDRTIYEPASLDIGDGVTYKIPPTYDQLAAMMNLPSFSDILVEEFHLKGTLDLGSLAAMMASDKRGGTRNRAGMGETLPQYDSLQARLKAMSASNSPHQFSLKVSDIGLNSSIPEGAAGNIKRSILSEGGVLQVYYVKVLEKGDAYEIIERSLPKKQKVKKDPSLIEKEEMERIGKVWVNIVRREIPKHYRFFTGFHRKQLADAKRFSENCQREVRMKASRSLKFMKSAPIRTRKLARDVLLFWKRSDKEMAELRKKEEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSDVLPTVDEKADDQDAETGSSGAGPSEEEDPEEAELKKEALKAAQEAVSKQRKLTSAFDSECLRLRQADETDALSQEVAGASNIDLQTPSTMPVASTVRTPEMFRGRLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPSSVLNNWKEELERFCPEMKALPYWGGLHERTVLRKSINPKDLYRREAKFHILITSYQLIVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDNHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTRKIEVTVHCKLSSRQQAFYQAIKNKISLADLFDSNRGQLNDKRIDNLMNIVIQLRKVCNHPESFERSEGTTFYNFAEIPSSFPPPPFGELEDVYYAGGHNPISYKMPKLVHQEIMQGSKLLNSTIARGVSREFFQRHFNIYRPENVFQSIFSEGNKSNASFMKSGTFGFTHLMDLSPQEVMFSATGSFMEQVLFSIVRWEQKFINEVVDFVTETVDNDPEYGYLEAGKVRAVSRMLLVPTKSETKIFQRRFATGPSHAPFEALVVTYEDRIISNARLIHSAYTYIPRTRAPPIVAHCSDRSFSYKTLEELHDPWVMRLLVGFARTSEFNGPRKPDGPPHHLIQEIDCELTVAQPALQLTYKILGSSPPMQNFDPAKLITDSGKLQTLDILLKRLRAENHRVLLFAQMTRMLNILEDYMNYRKYRYFRLDGSTSIQDRRDMVRDFQQRNDVFVFLLSTRAGGLGINLTAADTVIFYENDWNPTMDQQAMDRAHRIGQTKDVTVYRLICKETVEENILLRASQKSTVQNLVMTSGSAGDVFVAEDIVSLLLDDAQLEQKFNGVPLQVNDKQKKKQTVKVIRVNEEGDATLEDLTDSGAQRPHNDIFLDPEGPKPSNKKRKAASVKQTASRARNFQKINELNRTMPTEYELYDDLAVQKPKRPKKAKKVGNDKCDDPSAGADRIGTIFT 1452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral986g00001 1452 PANTHER HELICASE SRCAP-RELATED 28 467 - -
Pral986g00001 1452 SMART helicmild6 1178 1261 IPR001650 -
Pral986g00001 1452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 758 1300 IPR027417 -
Pral986g00001 1452 ProSiteProfiles DBINO domain profile. 293 418 IPR020838 GO:0003677
Pral986g00001 1452 Coils Coil 365 404 - -
Pral986g00001 1452 FunFam Putative DNA helicase INO80 500 778 - -
Pral986g00001 1452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 511 756 IPR027417 -
Pral986g00001 1452 MobiDBLite consensus disorder prediction 430 455 - -
Pral986g00001 1452 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 540 711 IPR014001 -
Pral986g00001 1452 MobiDBLite consensus disorder prediction 1 26 - -
Pral986g00001 1452 Gene3D - 1117 1360 IPR027417 -
Pral986g00001 1452 SMART ultradead3 524 719 IPR014001 -
Pral986g00001 1452 Pfam DNA-binding domain 288 417 IPR020838 GO:0003677
Pral986g00001 1452 Pfam Helicase conserved C-terminal domain 1152 1261 IPR001650 -
Pral986g00001 1452 MobiDBLite consensus disorder prediction 1422 1452 - -
Pral986g00001 1452 CDD SF2_C_SNF 1140 1272 - -
Pral986g00001 1452 MobiDBLite consensus disorder prediction 1357 1393 - -
Pral986g00001 1452 Gene3D - 501 780 IPR038718 -
Pral986g00001 1452 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1152 1302 IPR001650 -
Pral986g00001 1452 Pfam SNF2-related domain 543 829 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral986g00001 Pral-Chr986 4755 14493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral986g00001 549 827 RAD5 or RAD16-like Gene Family AT5G43530 29.245 1.22e-26 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral986g00001 SNF2_N 9.6e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral986g00001 K11665 - gmx:100780615 2211.8