Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral983g00008 ATGGGTCTGAGAGATCAGTACTGCAATGTACAAGACAAGAATAATCTCTACTTTCATGCTTCTCCAAATTTCATAGAATGGCTCAAGCCATCATCATCATCATCTTCTTCTTCTGATGAGACTTGTCAAAACGAGGCCGTTCGGGAGACCATCCAGTTTCTGCCCCCATCGAAAGATTTGGAAGTCGGAGTGGAAAAGGAGGTGTTTGGATCAGTGAAAGAAGAGAAGGTACTGCTGGAGCAAGTTGGGGTGGCTTTGCACATTGGGTTGCCTACTAATTACACAGAAGAAGACAGTGATATGAAGAAGAAGGTTACTGATGTTAAAGAAGAAGACGAAGAACAAGAAGAAGAAGGCATGAGGATGAGGATGATGAAGAGAAGCTTCCATGGATCTTTCAACCAAGAGAGAAGGTTCTGGATACCAACTCCTGCACAGATCCTAATTGGGCCGATGCAGTTTGCTTGCTCCATATGCAGTAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGACATGGGTCCGAATTTAGGAAAGGACCAGACTCGCTTAGAGGAACACAACCAGCGGCAATGCTGAGGCTACCATGTTATTGCTGTGCTCATGGCTGCAAGAACAACATCAACCACCCTAGAGCCAAGCCACTGAAGGACTTCAGAACCCTGCAGACTCACTACAAGAGAAAGCATGGCTCCAAACCCTTCATGTGCAGAAAATGTGCCAAGACTTTCGCTGTGAAAGGGGATTGGAGGACTCACGAGAAGAACTGTGGCAAGTTGTGGTATTGCACTTGTGGTTCAGATTTCAAGCACAAAAGGTCCCTTAAGGATCATATTAGGTCTTTCGGAAAGGGCCACAAACCCCATCCTTCTCTCGAAGGTTTTGAGAAGGACTCCGAAGAAGATGAAGTCATTACTCACACATAA 936 0.453 MGLRDQYCNVQDKNNLYFHASPNFIEWLKPSSSSSSSSDETCQNEAVRETIQFLPPSKDLEVGVEKEVFGSVKEEKVLLEQVGVALHIGLPTNYTEEDSDMKKKVTDVKEEDEEQEEEGMRMRMMKRSFHGSFNQERRFWIPTPAQILIGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCAKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHKPHPSLEGFEKDSEEDEVITHT 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral983g00008 311 MobiDBLite consensus disorder prediction 287 311 - -
Pral983g00008 311 SUPERFAMILY beta-beta-alpha zinc fingers 224 258 IPR036236 -
Pral983g00008 311 SMART c2h2final6 238 258 IPR013087 -
Pral983g00008 311 SMART c2h2final6 154 176 IPR013087 -
Pral983g00008 311 SMART c2h2final6 201 233 IPR013087 -
Pral983g00008 311 ProSitePatterns Zinc finger C2H2 type domain signature. 156 176 IPR013087 -
Pral983g00008 311 FunFam Zinc finger protein WIP2 207 289 - -
Pral983g00008 311 MobiDBLite consensus disorder prediction 97 120 - -
Pral983g00008 311 PANTHER ZINC FINGER PROTEIN WIP2 26 305 IPR043584 GO:0003700|GO:0010468
Pral983g00008 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 181 IPR013087 -
Pral983g00008 311 SUPERFAMILY beta-beta-alpha zinc fingers 150 177 IPR036236 -
Pral983g00008 311 Gene3D Classic Zinc Finger 153 176 - -
Pral983g00008 311 MobiDBLite consensus disorder prediction 283 311 - -
Pral983g00008 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 291 IPR013087 -
Pral983g00008 311 Gene3D Classic Zinc Finger 196 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral983g00008 Pral-Chr983 52292 55662 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral983g00008 21 303 C2H2 Transcription Factor Family AT1G08290 55.728 2.05e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral983g00008 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral983g00008 - - gmx:100802773 431.795