Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral977g00012 ATGGGAAGAAGAAATGGAGGAAGGTCACTGCACGAAATTCTTCGTCGTCGCCTCGAGTCCTGCAAATCCAGGTACTCAACTATGGATGAAATTGTGAATCATCTTCGTGCAAATTACCCTGATTATCAGCGAACAAAACAACAAACTTTGACTCGATTTGTTCAAGAAGCTTTGGAGTCATCCAAGCATGGGAACAGGCAGTTGAACAGAAAGCCTAATACTCCCATATTGAAGCCTGACACCGTAGAAGATAATGATGAAGACGAAGAAGAGGGTCGAAGTGCATCTCGAAAGAGGCGCAAGAAAGTTGATGAAAGCGAAGAGAGATTGCAAAAAATGGAGGATTTACACCTTCAAAGGTTGCAAAGGGATCGGGGCATTCTATCAACCTCTTTTGCCTCAACTTCTAGTACATCAGTGTCATCAGACGGCGAAGATGGGACTGTGTCTACGTCAGAGGATGCAATTTATGGGGAGAAAGTGGAACCAGCCTTTGACTTAATGAAAACAATGTTGCGGGCTTCATACTCGGAAACAAAGAATGTGAAATCCACAGTAGAGGAGAAAAACATTGAACTGGAGGTGGCTAATAATAAGAAGGCAACTAAGGTTGATGCTATGAATGCGGTTGGAGGTAACATGAACGATGATTTGGAACCAAAAAGGCAATTGAGGGGTTCAGTTCCGAATGGCAATGGTGATGTTGAGGTCAAGGGGAAGGGTGGACCTAGATTCAAAGATTTGGGTGGGATGAAGAAGGTGCTGGAGGAATTGAAGATGGAAGTAATTGTTCCACTTTATCATCCACAGTTGCCAAGAAAGCTAGGGGTGAGGCCTATGGCAGGGATTTTGTTACATGGACCCCCAGGGTGTGGCAAAACCACTCTGGCTCTTGCTATAGCTAATGAGACCGGTTTTCCATTCTATCAGATATCAGCAACAGAAGTGGTTTCCGGAGTTTCAGGGGCTTCTGAAGAAAACATTAGAGAGCTTTTTTCTAAAGCATACAAGACTGCCCCATCAATTGTCTTTATCGATGAGATTGATGCAATTGCTTCAAAAAGAGAAAATTTACAACGTGAGATGGAGAGACGAATTGTAACACAGTTAATGACTTCAATGGATCAATCAAGCAGGCTCTTACAGCCAGCTGATAGCTCAGAAAGTTCTGATGCCCTTCCTGGCTATATTCTTGTTATTGGAGCTACGAATAGGCCTGATGCTGTTGACCCTGCCCTGAGAAGGCCTGGGCGATTTGATCGTGAAATTTTCCTTGGTGTCCCTGATGAATATGCTAGGGAGGAGATCTTGTCTGTGCTTACTCGCAATCTGAATCTGGAGGGCTCATTTGACCTTAGAAAAATAGCCAGGTCTACACCAGGTTTTGTTGGAGCAGATTTGGCAGCTCTAGCTGATAAGGCGGGTAACCTAGCAATGAAAAGAATTATTCACGACAGGAAACATGAATTATCCCAAGATCTTTTAGATGAGCATGATGAAGATTGGTGGAGGGAACCTTGGTTACCAGAAGAGATGGATAAGCTTGTCATCAAAATGTCAGATTTTGAGGAAGCAGTCAAATTAGTGCAACCTTCATCAAGAAGAGAAGGGTTCTCTTCCATTCCTAATGTAAAATGGGCAGATATTGGGGGGCTTGATCTTCTAAGACAAGAGTTTGAGCGTTATATTGTCAGACGCATAAAGTATCCAGAGGATTATGAGGAATTTGGGGTGGATCTTGAGACAGGATTTTTGCTTTATGGACCACCAGGGTGTGGTAAAACACTGATCGCTAAAGCTGTTGCCAATGAGGCGGGAGCCAATTTTATTCATATCAAGGGCCCTGAACTTCTAAATAAATATGTTGGAGAAAGTGAGCTAGCAGTGCGGACATTGTTTAGTCGGGCAAGAACATGTTCACCTTGCATTCTTTTCTTTGATGAGGTGGATGCACTGACAACTAAACGTGGTAAAGAAGGTGGATGGGTTGTAGAGCGACTATTGAACCAGCTACTTATTGAATTAGACGGTGCAGAGCAAAGGCAAGGTGTTTTTGTCATTGGTGCTACAAACAGACCTGAAGTGATGGACCGTGCAGTCCTTCGGCCCGGTAGGTTAGGTAAACTTCTGTTTGTTCCTCTGCCAAACTCAGATGAGCGAGGCTTGATCTTAAAAGCTCTTGCAAGGAAGAAGCCAATTGATGACACAGTGGATTTGTGTGCCATTGGAAGAATGGAAGCTTGTGAAAATCTTAGTGGTGCTGATCTTGCTGCATTGATGAACGAAGCAGCTCTGGCTGCTGCTGAAGAGAAGTCGGCATCAACAGCAGAGAGAACTTCAGATGCATTGACCATCAAATTAAGCCATTTTGAGACTGCTCTCACTAAAATTTCTCCCTCGGTGTCAGACATGCAAAAGCAATACTATCAACGATTAGCAGATACTTTTAAGGCTGCATGA 2460 0.4362 MGRRNGGRSLHEILRRRLESCKSRYSTMDEIVNHLRANYPDYQRTKQQTLTRFVQEALESSKHGNRQLNRKPNTPILKPDTVEDNDEDEEEGRSASRKRRKKVDESEERLQKMEDLHLQRLQRDRGILSTSFASTSSTSVSSDGEDGTVSTSEDAIYGEKVEPAFDLMKTMLRASYSETKNVKSTVEEKNIELEVANNKKATKVDAMNAVGGNMNDDLEPKRQLRGSVPNGNGDVEVKGKGGPRFKDLGGMKKVLEELKMEVIVPLYHPQLPRKLGVRPMAGILLHGPPGCGKTTLALAIANETGFPFYQISATEVVSGVSGASEENIRELFSKAYKTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTSMDQSSRLLQPADSSESSDALPGYILVIGATNRPDAVDPALRRPGRFDREIFLGVPDEYAREEILSVLTRNLNLEGSFDLRKIARSTPGFVGADLAALADKAGNLAMKRIIHDRKHELSQDLLDEHDEDWWREPWLPEEMDKLVIKMSDFEEAVKLVQPSSRREGFSSIPNVKWADIGGLDLLRQEFERYIVRRIKYPEDYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAEQRQGVFVIGATNRPEVMDRAVLRPGRLGKLLFVPLPNSDERGLILKALARKKPIDDTVDLCAIGRMEACENLSGADLAALMNEAALAAAEEKSASTAERTSDALTIKLSHFETALTKISPSVSDMQKQYYQRLADTFKAA 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral977g00012 819 CDD RecA-like_NVL_r2-like 552 712 - -
Pral977g00012 819 Pfam AAA+ lid domain 737 773 IPR041569 -
Pral977g00012 819 Pfam AAA+ lid domain 450 484 IPR041569 -
Pral977g00012 819 MobiDBLite consensus disorder prediction 59 74 - -
Pral977g00012 819 MobiDBLite consensus disorder prediction 124 149 - -
Pral977g00012 819 Pfam ATPase family associated with various cellular activities (AAA) 585 713 IPR003959 GO:0005524|GO:0016887
Pral977g00012 819 Pfam ATPase family associated with various cellular activities (AAA) 283 426 IPR003959 GO:0005524|GO:0016887
Pral977g00012 819 ProSitePatterns AAA-protein family signature. 684 702 IPR003960 GO:0005524|GO:0016887
Pral977g00012 819 Coils Coil 96 116 - -
Pral977g00012 819 Gene3D - 237 426 IPR027417 -
Pral977g00012 819 PANTHER AAA-FAMILY ATPASE 80 817 - -
Pral977g00012 819 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 535 IPR027417 -
Pral977g00012 819 MobiDBLite consensus disorder prediction 59 154 - -
Pral977g00012 819 Gene3D - 428 536 - -
Pral977g00012 819 ProSitePatterns AAA-protein family signature. 397 415 IPR003960 GO:0005524|GO:0016887
Pral977g00012 819 MobiDBLite consensus disorder prediction 91 122 - -
Pral977g00012 819 MobiDBLite consensus disorder prediction 210 242 - -
Pral977g00012 819 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 542 816 IPR027417 -
Pral977g00012 819 Gene3D - 542 809 IPR027417 -
Pral977g00012 819 SMART AAA_5 279 429 IPR003593 GO:0016887
Pral977g00012 819 SMART AAA_5 580 716 IPR003593 GO:0016887
Pral977g00012 819 FunFam Ribosome biogenesis ATPase RIX7 234 426 - -
Pral977g00012 819 Gene3D - 715 795 - -
Pral977g00012 819 FunFam Cell division control protein 48 homolog C 428 536 - -
Pral977g00012 819 FunFam ATPase, AAA family protein 542 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral977g00012 Pral-Chr977 30422 37185 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral977g00012 515 817 Calmodulin-binding Proteins AT3G56690 40.984 2.84e-65 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral977g00012 K14571 - gmx:100809594 1126.31