Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral970g00119 ATGAGAAAATTGTGTGAGGCCTGTGCCCAGAAGTGCCTTCCGATTCAGAGAAAGAGAAAAAAATCGTCAAATGTACCTTCTTCCTTCTTCAAGGTCATGATTGGCCCCGATTTTTCTCAAGTTTTGTATCTGCCTCCTAAATTTGGTCGCACAGCGTCAACCCTGGTTGACGAAGAAGCCATTGTTGAGGATTCGAGTGGACAACGATGGACGGTACAAATATCAGTTGTGGATAATTCTTATGCTTTTCACGAGGGATGGAATGCTTTTTCGTTGGATCATGGGCTTGAAGTTGGACACTTTTTGGTGTTCCATTACATGGGAAGATCACACTTTGTTGTTGAGATTTTTGATAAATCTGGGTGTGAAAAGGTTGATTTTCCCGGGCGGAGGAAGCAGAAGAAGAGAAAAAAGATCAGAATTGACCTTGATGCTAGCGAGGAATTGTTAAACAGACAAGGTTTATTATCCTCGGAGTCAGATGCGGAAAAAGTGCAAAGCCAGGACGAGGTTGTTGGAGCAAACAGTGCAGAAATTAACGAAGAGAAAACCTCAGAAAAGAGGATCCAATCTTTGTACCAAGACAAAACCTTTGAAGATCCTTGTTACTTGAAAGACCAAGACATTGAAGACAAAGAAAGAGAGAACAGGAGTCCTATGTTTGATGTCAGGTATGAAATATTGAACAATTCAGGTGCTCACAGGACCGGCAAAATTACAGGCAGCAATGAAATAGTTGTTACAAACATCTATACCCAAGATCCTTTGCTTGAAGAGATGATGGTTAATAATGGAGCAAATCAAGATCCGTTTGAAGTTGAAGTAACAAAAAGAAGTCATTTTCTTGAAGAGTTAGACAGGAGTACATTACATCCTTGTGGAGCCAAGATTCCTGAGCATCTTTTGATCCCATGTACCGTGCAACATGAAGAAACCAGAGTAAACAATCTCATCATGCCCAACTGGGAAGACCAAAAGTGCCAATTTGCTGAGAACTCAGAGACCAAGCAATTATTGATATCGAAAGATGAATATCCTTTGCACGCTGGCAATTGTGAGGATACCAAAGAGATGATCGCTGGGTTGCATGTGTCCCTGGATGCTGCTCCTATGTGCAATGTTACAGTGGAAATGGAGAGAATGTTTCAAAAAGAGCTCCTGGACATGACTTCAGATATGTGCAGTCACAATGATAAAATCCGGTCAATTATTGGAGATCAAGGCAGCAATTTCAGTTCAGTGAAAGCTGAACCTTCTGACTATGGTTGTCACTCAAAACTCCAGCCATCTTGGTTTAACTGTATCAACTGTACAGTAATTTTAAACTGCATGACGAAATTAAGAGTATGTGTGTATGCATATCATGAGCTTAGGGAAGAAATGTGA 1386 0.4084 MRKLCEACAQKCLPIQRKRKKSSNVPSSFFKVMIGPDFSQVLYLPPKFGRTASTLVDEEAIVEDSSGQRWTVQISVVDNSYAFHEGWNAFSLDHGLEVGHFLVFHYMGRSHFVVEIFDKSGCEKVDFPGRRKQKKRKKIRIDLDASEELLNRQGLLSSESDAEKVQSQDEVVGANSAEINEEKTSEKRIQSLYQDKTFEDPCYLKDQDIEDKERENRSPMFDVRYEILNNSGAHRTGKITGSNEIVVTNIYTQDPLLEEMMVNNGANQDPFEVEVTKRSHFLEELDRSTLHPCGAKIPEHLLIPCTVQHEETRVNNLIMPNWEDQKCQFAENSETKQLLISKDEYPLHAGNCEDTKEMIAGLHVSLDAAPMCNVTVEMERMFQKELLDMTSDMCSHNDKIRSIIGDQGSNFSSVKAEPSDYGCHSKLQPSWFNCINCTVILNCMTKLRVCVYAYHELREEM 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral970g00119 461 ProSiteProfiles B3 DNA-binding domain profile. 27 120 IPR003340 GO:0003677
Pral970g00119 461 Pfam B3 DNA binding domain 29 119 IPR003340 GO:0003677
Pral970g00119 461 SUPERFAMILY DNA-binding pseudobarrel domain 27 122 IPR015300 -
Pral970g00119 461 PANTHER B3 DOMAIN-CONTAINING 22 189 - -
Pral970g00119 461 CDD B3_DNA 28 118 IPR003340 GO:0003677
Pral970g00119 461 Gene3D - 21 122 IPR015300 -
Pral970g00119 461 SMART B3_2 29 120 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral970g00119 Pral-Chr970 1028639 1031325 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral970g00119 29 200 B3 DNA Binding Superfamily AT4G01580 26.012 7.48e-14 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral970g00119 B3 6.8e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral970g00119 - - pcin:129308262 536.569