Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral970g00013 ATGGCTGGCAAAAGTGGCAAGAAACCATTGAGCCTCAACGATAGCCATTATCGATTCCTCCAAGACCTCTCTGCTCCTCCGAAGCCCTCCTCAAAGCCATCTGACGGCGACGACGAGTCGTCCCCGACAACACTCAAAGGCCGAAGGCGGCAACAGGGACAAGATTTATTTAGGGACGAGGAAGATGATAACATCCCTCGATTTTCTGCAATTACCGACTTTGATTCTCCGATTGAGCTACGCTCAGCGGAAGACAAAAAGCCTGTCCAGGTAGACGGTCGACCTCGCCTCCGTACAGTCTCGCCGAAGGAAAACAGTAAAGATCAAGGTGACAATATTCCCCAGTCTAAAGAAGCGACCGACTTGAATACCCACAGAGGGGAAAATAAGACGAAGGTCAAAATGGAAGGCCGGCGTCGCCTATGCAAGGTGTCATATGCAGACAGTGATAATGCTGATAAAATGGCGGCGCTTGATGACTCGGAGGTTTCTGACCTTGTGGATTTTGATTCACCCCCTTTGCCGACAAAAAATGCAACGGGCGTTGAGAAGAGTCAGGGTAGGAGTGAAATTAGGGATATATTAGATGAGTTGAGCTCGAGGTTTGATATTCTGTCAGTAGATAAGAAGCGGGGAGCGAAATCAGCGCATACATTTGAAAATTGTTCATCATTGGTTATAGGAAATGAAAATACGGAAGATAAGAATATTGATTATGCCAGTGCAGATTCTTCATTTTCAGCTCAGCAGGACCCATGCGACAGTTCATCCGATGCATCTAAGAGTGCTACTGGAGGCATTGACATTGAACATGTAGAAGATGATTTGGACGACTCTATTGAAGTGCTGGATCATTTTGACTCTGAGAATGCTAATTCTATAACTTTTAATGGTCCCCATTTCACATACGAGTTACCAGGAAAAATTGCCAAAATGTTGTATCCACATCAGCGTGATGGCTTGAAGTGGCTTTGGTGTCTGCATTGTCAGGGTAAGGGTGGAATCCTGGGGGATGACATGGGTCTAGGGAAAACAATGCAGATTTGTAGTTTTCTAGCTGGTTTATTCAATTCACGTTTGATTAAAAGGGCATTGGTGGTGGCACCAAAAACCTTACTTCCCCATTGGATCAAAGAATTATCTATTGTCGGTCTTTCTGAGAAGACAAGGGAATACTTTGGAACTTGTACTAAAGCCCGAGAGTATGAACTTCAATACATACTCCAGGATAAAGGTGTTCTTCTTACAACATACGATATTGTTCGCAATAATTCTAAATCATTACGGGGGAATTATCTATCTGATGATGAGGAAAATGAAGACGGCCCCATATGGGATTATATGATACTTGATGAGGGCCATCTTATAAAGAATCCCAGCACACAAAGAGCTAAAAGTTTGCTACAGATACCAAGTGCCCATCGCATAATCATCAGTGGCACGCCATTGCAAAATAATCTTAAGGAGCTGTGGGCCTTGTTCAATTTCTGCTGCCCTGAGTTGCTGGGTGATAAACAATGGTTTAAAGAAAATTTCGAGTCAGCTATACTTCGTGGAAGTGACAAAAGAGCTTCTGAGAGAGAGAAGCGTGTTGGTTCTTCAGTTGCAAAGATGCTCAGAGACCGTATTCAGCCATACTTTTTAAGACGCCTAAAGAGTGAGGTTTTTAATCAAGATGACAAGGATACAACAACGAAACTCTCTCGGAAAAGAGAGATTATCGTGTGGTTACGATTGACTAGTATTCAGAGATATCTTTATGAAGCGTTTCTAAAGAGTGAGATTGTTCTTTCAGCATTTGACGGCTCACCTCTTGCTGCACTTACGATTTTGAAGAAAATTTGTGATCATCCGCTTTTGTTGACCAAGCGGGCTGCTGAAGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAGGTTAACATTGCAGAGAAACTGGCAATGCACATAGCTGATGTTGCCGACACAGACAAGTTCAAGGCTGAGCATGATGTCTCGTGCAAAATATCTTTCATAATGTCATTACTGGATAATTTGATCCCCCAAGGACATCATGTGCTTATTTTTTCTCAAACGCGCAAGATGCTTAATCTTATTCAGGAATCTATAACGTCCAAAGGTTATGAATTTGTACGAATTGATGGAACAACAAAAGCTACTGATAGAATAAGGATTGTTAATGATTTCCAAGATGGTTCGGCAGCTCCCATATTTCTTTTGACATCTCAAGTTGGTGGTTTGGGGCTGACACTTACTAAGGCAGATCGTGTGATTGTGGTTGATCCTGCTTGGAACCCAAGTACGGATAACCAAAGCGTTGACCGTGCATATCGTATTGGCCAAAAGAAAGATGTTCTTGTATATAGACTAATGACATGTGGAACTGTTGAAGAAAAGATATACAGGAAGCAGGTATACAAGGGGGGATTGTTTAAAACAGCAACAGAACATAAAGAACAAATCCGGTACTTCAGCCAGCAGGATCTCAGAGAGCTTTTCAGCCTCCCTAAGGACGGTTTTGATGTGTCTGTTACTCAGAAGCAATTAGAAGAGGAGCATGCTTGCGAAGATACAGTGGATGACTCTTTCAAAGCACACATAGAGTTCTTGAAAAGTCAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTTTTCTCCAAGACAGCACCAGTTCAAGATGCACCTGAGGATGATAAAGTGTCAAGGAATCATGGGACTAGATATGTTGGAACTTCAACATCTACTTCCCTTGAACGTCCTGTAGATGGAGCTGAGTTTGCTTTTAATCCAAAGGAAGTAAAATTGAGCCAAAAAGGTTCTTCCCCCGATAGTGCTGGTAAATTGACAGGGTCTGAAATTAGGGATAAAATCAGACGGATTTCTCAAACACTTGCAAATAAGGTGATGATTTCTAGATTACCTGATAAGGGAGAAAAACTACAACAGCGGCTTGCTGAACTAAATTCTGAGCTCAGTAAATTAAAGATAGAAGAAAGAAATGTGATTGATTTGGATGACATAAGCGAAGAATTTCAAAGGGTAGTAAATGTATAA 3060 0.4209 MAGKSGKKPLSLNDSHYRFLQDLSAPPKPSSKPSDGDDESSPTTLKGRRRQQGQDLFRDEEDDNIPRFSAITDFDSPIELRSAEDKKPVQVDGRPRLRTVSPKENSKDQGDNIPQSKEATDLNTHRGENKTKVKMEGRRRLCKVSYADSDNADKMAALDDSEVSDLVDFDSPPLPTKNATGVEKSQGRSEIRDILDELSSRFDILSVDKKRGAKSAHTFENCSSLVIGNENTEDKNIDYASADSSFSAQQDPCDSSSDASKSATGGIDIEHVEDDLDDSIEVLDHFDSENANSITFNGPHFTYELPGKIAKMLYPHQRDGLKWLWCLHCQGKGGILGDDMGLGKTMQICSFLAGLFNSRLIKRALVVAPKTLLPHWIKELSIVGLSEKTREYFGTCTKAREYELQYILQDKGVLLTTYDIVRNNSKSLRGNYLSDDEENEDGPIWDYMILDEGHLIKNPSTQRAKSLLQIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDKQWFKENFESAILRGSDKRASEREKRVGSSVAKMLRDRIQPYFLRRLKSEVFNQDDKDTTTKLSRKREIIVWLRLTSIQRYLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEVNIAEKLAMHIADVADTDKFKAEHDVSCKISFIMSLLDNLIPQGHHVLIFSQTRKMLNLIQESITSKGYEFVRIDGTTKATDRIRIVNDFQDGSAAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKDGFDVSVTQKQLEEEHACEDTVDDSFKAHIEFLKSQGIAGVSHHSLLFSKTAPVQDAPEDDKVSRNHGTRYVGTSTSTSLERPVDGAEFAFNPKEVKLSQKGSSPDSAGKLTGSEIRDKIRRISQTLANKVMISRLPDKGEKLQQRLAELNSELSKLKIEERNVIDLDDISEEFQRVVNV 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral970g00013 1019 Gene3D - 572 870 IPR027417 -
Pral970g00013 1019 MobiDBLite consensus disorder prediction 166 185 - -
Pral970g00013 1019 MobiDBLite consensus disorder prediction 243 267 - -
Pral970g00013 1019 MobiDBLite consensus disorder prediction 78 105 - -
Pral970g00013 1019 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 550 IPR027417 -
Pral970g00013 1019 CDD SF2_C_SNF 662 793 - -
Pral970g00013 1019 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 561 842 IPR027417 -
Pral970g00013 1019 Gene3D - 288 571 IPR038718 -
Pral970g00013 1019 SMART ultradead3 308 508 IPR014001 -
Pral970g00013 1019 MobiDBLite consensus disorder prediction 106 120 - -
Pral970g00013 1019 MobiDBLite consensus disorder prediction 243 263 - -
Pral970g00013 1019 FunFam Protein CHROMATIN REMODELING 24 292 570 - -
Pral970g00013 1019 Pfam Helicase conserved C-terminal domain 670 782 IPR001650 -
Pral970g00013 1019 Coils Coil 979 1006 - -
Pral970g00013 1019 MobiDBLite consensus disorder prediction 891 919 - -
Pral970g00013 1019 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 673 832 IPR001650 -
Pral970g00013 1019 Pfam SNF2-related domain 328 620 IPR000330 GO:0005524|GO:0140658
Pral970g00013 1019 PANTHER SNF2/RAD54 FAMILY MEMBER 128 996 - -
Pral970g00013 1019 SMART helicmild6 699 782 IPR001650 -
Pral970g00013 1019 MobiDBLite consensus disorder prediction 121 136 - -
Pral970g00013 1019 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 325 500 IPR014001 -
Pral970g00013 1019 MobiDBLite consensus disorder prediction 1 136 - -
Pral970g00013 1019 MobiDBLite consensus disorder prediction 32 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral970g00013 Pral-Chr970 158173 167438 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral970g00013 284 836 RAD5 or RAD16-like Gene Family AT1G02670 24.272 1.82e-37 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral970g00013 SNF2_N 2.1e-47 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral970g00013 K20093 - gmx:100779283 1371.68