Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral970g00012 ATGGCTGGCAAAAGTGGCAAGAAACCATTGAGCCTCAACGATAGCCATTATCGATTCCTCCAAGACCTCTCTGCTCCTCCGAAGCCCTCCTCAAAGCCATCTGACGGCGACGACGAGTCGTCCCCGACAACACTCAAAGGCCGAAGGCGGCAACAGGGACAAGATTTATTTAGGGACGAGGAAGATGATAACATCCCTCGATTTTCTGCAATTACCGACTTTGATTCTCCGATTGAGCTACGCTCAGCGGAAGACAAAAAGCCTGTCCAGGTAGACGGTCGACCTCGCCTCCGTACAGTCTCGCCGAAGGAAAACAGTAAAGATCAAGGTGACAATATTCCCCAGTCTAAAGAAGCGACCGACTTGAATACCCACAGAGGGGAAAATAAGACGAAGGTCAAAATGGAAGGCCGGCGTCGCCTATGCAAGGTGTCATATGCAGACAGTGATAATGCTGATAAAATGGCGGCGCTTGATGACTCGGAGGTTTCTGACCTTGTGGATTTTGATTCACCCCCTTTGCCGACAAAAAATGCAACGGGCGTTGAGAAGAGTCAGGGTAGGAGTGAAATTAGGGATATATTAGATGAGTTGAGCTCGAGGTTTGATATTCTGTCAGTAGATAAGAAGCGGGGAGCGAAATCAGCGCATACATTTGAAAATTGTTCATCATTGGTTATAGGAAATGAAAATACGGAAGATAAGAATATTGATTATGCCAGTGCAGATTCTTCATTTTCAGCTCAGCAGGACCCATGCGACAGTTCATCCGATGCATCTAAGAGTGCTACTGGAGGCATTGACATTGAACATGTAGAAGATGATTTGGACGACTCTATTGAAGTGCTGGATCATTTTGACTCTGAGAATGTTAATTCTATGACTTTTAATGGTCCCCATTTCGCACACGAGTTACCAGATTCTTCATTTTCAGCTCAGCAGGACCCATGTGACAGTTCATCCGATGCATCTAAGAGTGCTACTGGAGGCATTGACATTGAACATGTAGAAGATGATTTGGACGACTCTATTGAAGTGCTGGATCATTTTGACTCTGAGAATGCTAATTCTATAACTTTTAATGGTCCCCATTTCACATACGAGTTACCAGGAAAAATTGCCAAAATGTTGTATCCACATCAGCGTGATGGCTTGAAGTGGCTTTGGTGTCTGCATTGTCAGGGTAAGGGTGGAATCCTGGGGGATGACATGGGTCTAGGGAAAACAATGCAGATTTGTAGTTTTCTAGCTGGTTTATTCAATTCACGTTTGATTAAAAGGGCATTGGTGGTGGCACCAAAAACCTTACTTCCCCATTGGATCAAAGAATTATCTATTGTCGGTCTTTCTGAGAAGACAAGGGAATACTTTGGAACTTGTACTAAAGCCCGAGAGTATGAACTTCAATACATACTCCAGGATAAAGGTGTTCTTCTTACAACATACGATATTGTTCGCAATAATTCTAAATCATTACGGGGGAATTATCTATCTGATGATGAGGAAAATGAAGACGGCCCCATATGGGATTATATGATACTTGATGAGGGCCATCTTATAAAGAATCCCAGCACACAAAGAGCTAAAAGTTTGCTACAGATACCAAGTGCCCATCGCATAATCATCAGTGGCACGCCATTGCAAAATAATCTTAAGGAGCTGTGGGCCTTGTTCAATTTCTGCTGCCCTGAGTTGCTGGGTGATAAACAATGGTTTAAAGAAAATTTCGAGTCAGCTATACTTCGTGGAAGTGACAAAAGAGCTTCTGAGAGAGAGAAGCGTGTTGGTTCTTCAGTTGCAAAGATGCTCAGAGACCGTATTCAGCCATACTTTTTAAGACGCCTAAAGAGTGAGGTTTTTAATCAAGATGACAAGGATACAACAACGAAACTCTCTCGGAAAAGAGAGATTATCGTGTGGTTACGATTGACTAGTATTCAGAGATATCTTTATGAAGCGTTTCTAAAGAGTGAGATTGTTCTTTCAGCATTTGACGGCTCACCTCTTGCTGCACTTACGATTTTGAAGAAAATTTGTGATCATCCGCTTTTGTTGACCAAGCGGGCTGCTGAAGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAGGTTAACATTGCAGAGAAACTGGCAATGCACATAGCTGATGTTGCCGACACAGACAAGTTCAAGGCTGAGCATGATGTCTCGTGCAAAATATCTTTCATAATGTCATTACTGGATAATTTGATCCCCCAAGGACATCATGTGCTTATTTTTTCTCAAACGCGCAAGATGCTTAATCTTATTCAGGAATCTATAACGTCCAAAGGTTATGAATTTGTACGAATTGATGGAACAACAAAAGCTACTGATAGAATAAGGATTGTTAATGATTTCCAAGATGGTTCGGCAGCTCCCATATTTCTTTTGACATCTCAAGTTGGTGGTTTGGGGCTGACACTTACTAAGGCAGATCGTGTGATTGTGGTTGATCCTGCTTGGAACCCAAGTACGGATAACCAAAGCGTTGACCGTGCATATCGTATTGGCCAAAAGAAAGATGTTCTTGTATATAGACTAATGACATGTGGAACTGTTGAAGAAAAGATATACAGGAAGCAGGTATACAAGGGGGGATTGTTTAAAACAGCAACAGAACATAAAGAACAAATCCGGTACTTCAGCCAGCAGGATCTCAGAGAGCTTTTCAGCCTCCCTAAGGACGGTTTTGATGTGTCTGTTACTCAGAAGCAATTAGAAGAGGAGCATGCTTGCGAAGATACAGTGGATGACTCTTTCAAAGCACACATAGAGTTCTTGAAAAGTCAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTTTTCTCCAAGACAGCACCAGTTCAAGATGCACCTGAGGATGATAAAGTGTCAAGGAATCATGGGACTAGATATGTTGGAACTTCAACATCTACTTCCCTTGAACGTCCTGTAGATGGAGCTGAGTTTGCTTTTAATCCAAAGGAAGTAAAATTGAGCCAAAAAGGTTCTTCCCCCGATAGTGCTGGTAAATTGACAGGGTCTGAAATTAGGGATAAAATCAGACGGATTTCTCAAACACTTGCAAATAAGGTGATGATTTCTAGATTACCTGATAAGGGAGAAAAACTACAACAGCGGCTTGCTGAACTAAATTCTGAGCTCAGTAAATTAAAGATAGAAGAAAGAAATGTGATTGATTTGGATGACATAAGCGAAGAATTTCAAAGGGTAGTAAATGTATAA 3252 0.4207 MAGKSGKKPLSLNDSHYRFLQDLSAPPKPSSKPSDGDDESSPTTLKGRRRQQGQDLFRDEEDDNIPRFSAITDFDSPIELRSAEDKKPVQVDGRPRLRTVSPKENSKDQGDNIPQSKEATDLNTHRGENKTKVKMEGRRRLCKVSYADSDNADKMAALDDSEVSDLVDFDSPPLPTKNATGVEKSQGRSEIRDILDELSSRFDILSVDKKRGAKSAHTFENCSSLVIGNENTEDKNIDYASADSSFSAQQDPCDSSSDASKSATGGIDIEHVEDDLDDSIEVLDHFDSENVNSMTFNGPHFAHELPDSSFSAQQDPCDSSSDASKSATGGIDIEHVEDDLDDSIEVLDHFDSENANSITFNGPHFTYELPGKIAKMLYPHQRDGLKWLWCLHCQGKGGILGDDMGLGKTMQICSFLAGLFNSRLIKRALVVAPKTLLPHWIKELSIVGLSEKTREYFGTCTKAREYELQYILQDKGVLLTTYDIVRNNSKSLRGNYLSDDEENEDGPIWDYMILDEGHLIKNPSTQRAKSLLQIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDKQWFKENFESAILRGSDKRASEREKRVGSSVAKMLRDRIQPYFLRRLKSEVFNQDDKDTTTKLSRKREIIVWLRLTSIQRYLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEVNIAEKLAMHIADVADTDKFKAEHDVSCKISFIMSLLDNLIPQGHHVLIFSQTRKMLNLIQESITSKGYEFVRIDGTTKATDRIRIVNDFQDGSAAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKDGFDVSVTQKQLEEEHACEDTVDDSFKAHIEFLKSQGIAGVSHHSLLFSKTAPVQDAPEDDKVSRNHGTRYVGTSTSTSLERPVDGAEFAFNPKEVKLSQKGSSPDSAGKLTGSEIRDKIRRISQTLANKVMISRLPDKGEKLQQRLAELNSELSKLKIEERNVIDLDDISEEFQRVVNV 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral970g00012 1083 MobiDBLite consensus disorder prediction 243 267 - -
Pral970g00012 1083 SMART helicmild6 763 846 IPR001650 -
Pral970g00012 1083 CDD SF2_C_SNF 726 857 - -
Pral970g00012 1083 MobiDBLite consensus disorder prediction 243 263 - -
Pral970g00012 1083 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 737 896 IPR001650 -
Pral970g00012 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 614 IPR027417 -
Pral970g00012 1083 MobiDBLite consensus disorder prediction 307 327 - -
Pral970g00012 1083 Coils Coil 1043 1070 - -
Pral970g00012 1083 Gene3D - 352 635 IPR038718 -
Pral970g00012 1083 PANTHER SNF2/RAD54 FAMILY MEMBER 128 1060 - -
Pral970g00012 1083 Gene3D - 636 934 IPR027417 -
Pral970g00012 1083 MobiDBLite consensus disorder prediction 1 136 - -
Pral970g00012 1083 MobiDBLite consensus disorder prediction 304 331 - -
Pral970g00012 1083 Pfam Helicase conserved C-terminal domain 734 846 IPR001650 -
Pral970g00012 1083 MobiDBLite consensus disorder prediction 78 105 - -
Pral970g00012 1083 MobiDBLite consensus disorder prediction 166 188 - -
Pral970g00012 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 625 906 IPR027417 -
Pral970g00012 1083 MobiDBLite consensus disorder prediction 106 120 - -
Pral970g00012 1083 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 389 564 IPR014001 -
Pral970g00012 1083 SMART ultradead3 372 572 IPR014001 -
Pral970g00012 1083 MobiDBLite consensus disorder prediction 955 983 - -
Pral970g00012 1083 Pfam SNF2-related domain 392 684 IPR000330 GO:0005524|GO:0140658
Pral970g00012 1083 FunFam Protein CHROMATIN REMODELING 24 356 634 - -
Pral970g00012 1083 MobiDBLite consensus disorder prediction 121 136 - -
Pral970g00012 1083 MobiDBLite consensus disorder prediction 32 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral970g00012 Pral-Chr970 158173 167438 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral970g00012 348 900 RAD5 or RAD16-like Gene Family AT1G02670 24.272 2.33e-37 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral970g00012 SNF2_N 2.3e-47 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral970g00012 K20093 - qsa:O6P43_028613 1335.86