Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral970g00010 ATGGCGGATAAAAAAGATGGCAAGAAATCATTGAGCTTCAGTTCCAGCCCTTATCGAATCCTCCGAGAACTTTTTGCTCATTCTAAGCTCTCATCCAAACCGTCTGATGATGAAGATAAGTTATCATCAAGGTGGCGACAAGATAAAACTTTATCGAACGACAGCAAAAGTGAAGAAGATGAAACCACATTGACATGGAAGACCAACGTCACCTCAGCCAAGTTTATATTCACACAAAGAAATGCTGATAAAACTCTCGTGATTGATAAGTGGGAAGATTTTGACCTTGTGTGGATTTTTGACTATGCGGGTGCAGATTATTCAAGTTTACCTAAACAGGACCCCTGTGACAGTTCATACGGTGCAACTGAGAGTGTTGGTGGTGGCATTGAATCAGTGGAAAAAGACTCAGAAGCAGATTCTGTTCAATCGGATCATTTTGCCTCTGAAAGAGTCAGTTCTGTAACACTGAATGGCCCAAATTGTACATTCAAGCTGGAAGGTAAAATCGTAGAAACGTTGCTAAAACATCAGCTGGATGGCTTGAAGTGGCTCTGGTCCTTGCATTGCCAGGGAAAAGGTGGGATCTTGGGAGACGACATGGGTTTGGGGAAAACAAGGCAGATTTGTTGTTTTCTAGCTGGTTTATTGAATTCACGTTTGATTAAAAAGGCATTGGTGGTGGTACCAAAAACCTTGCTTCCCCATTGGATCAAAGAACTATCTGCTGTAGGTCTTTCTGAGAAGACAAGAGGATATAATGGAACTTCTAAAAAGGCTCGAGAGGAAGGACTTTTTCAGCATGAAGGTGTTCTCCTCACAACATATGGCATTGTTCGTGGCTATTCTAAATCATTAACAAAGCACAGGCACTTACGATCTTATGATGAGAAAAGCCAAGACAACCCCAAATGGGATTACGTGATACTTGATGAGGCCCATTATATAAAGAATCCAAAAACACAGAGAGCTAAAAGTTTGCTAGAGATACCATGTCCCCATCGCATAGTCGTCAGTGGCACGCCATGGCAAAATGATCTTAAGGAGATGTGGGCCTTGTTCAATTTCTGCTGTCCTGGGTTGCTCGGTGATAAGGAATGGTTCGAAGAAAAATTTGAGTGGCCCATACTTTGGGGCCGTGACAGAAGAGCTTCTAAAGAAGCCAAGCGGTTGGCTTCCTCTTCGGCAAAGGAGCTCAGAGATCTTATTCATCCTTTCTTTTTAAGTCGTCAAAAGAGTGAGGTTGGTGAAGTTAAAATTTCTAATAAACAAGACATTGTTGTGTGGCTGCGACTGACCAATATTCAGCGACAGCTTTACAAGAAATGTTTGAAGAGTGTGAACTATAAAACAATATATGGAGCACCGTTTGCTGCAATTGAGATGATGAAGAAAATATGTGATCATCCACTTCTGTTGTTTAAACGGAACCTGTCAGGAGGTAAATACAGGAAGCTGTTGAATCTAGCAGAGGCTGATCTTGCAGATAGTTTGGCAATGCGCATGAAAGGTGTTGGTGACGCGTACAAGTTCAAAGATATCTCCTGCAAAACGTCTTTCATAATGTCACTATTGGGTAATTTGATTCCACAGGGGCATTATGTGATTATATTTTCTGGAAGACTCAAGATGCTTGATCTTATTCAGAAATCCCTATTGTCCGAAGGTTATAAATTCTTACGAATTGATGGAACAACAAAAGTCAAGGACAGAACAAAGATTGTTAGTGATTTCCAAAATGATGTGGCTCCCATATTTCTCTTGTCATCTAAAGTTGGCGGTTTAGGGTTGACACTAACTAGGGCTGATCGAGTGATTGTGGCTGGCCCTGATTGGAACCCAAGTACGGACAACCAGATTGTCGATCGTGCATATCGTATTGGTCAAACGAAAGATGTTGTTGCATATAGACTAATTACGTGTGGAACATTCGAAGAAAAAGCATACAGGAAGCAGGTATTCAAGGACGGATTGTGTAAAACAGCAAAAGAGCATAAAGAACAAAATCGTTACTTCAGCAGGAGGGATCTCAAATATCTTTTCAGTCTCCCCGAAAAAGGCTTTGATGTATCTGTCACCCAGCAGCAATTAGAGAGGAAGCATGATTGGCAAAAGACAATGGATGAGTCTTTTAAAGAACATATAGAGTTCCTGAAAAGTCTAGGCATAGCTGGAGTTAGTCACCACAGTGTACTCTTCTCCAAAGAAGCATTGGATGAAGATGAGCCTGAAAATGATAAAGCACCAAGAGCTGAGTGTGGATCTGATCTATTAGCCCGGAAGCATTTCCTGGAGCGTAAATCCAGGTTCAGAAAATTGGACTGGGCTGGCCGATTCGCACAAGACTCCAATGAATGGAACCATAGTGGAAAGCAGAAGACTTTCCAAACTAAGTTGAGAAATCAGGTGGACGAATTCAAACTTAAGAGCCGTTCGCAATTAGATGTTGAAGTGAACCGACGTGATGTTGAAATTTCATCGTCCACAGGCCGCAAGACTAAACACACGCAGTGCCAAACCCGGAAGAGCAATGAAAGCATCATCCCTCGTCTTATCGATAGAGCGAGAAGGCTTTTTAAGATAATGAGATGA 2592 0.4178 MADKKDGKKSLSFSSSPYRILRELFAHSKLSSKPSDDEDKLSSRWRQDKTLSNDSKSEEDETTLTWKTNVTSAKFIFTQRNADKTLVIDKWEDFDLVWIFDYAGADYSSLPKQDPCDSSYGATESVGGGIESVEKDSEADSVQSDHFASERVSSVTLNGPNCTFKLEGKIVETLLKHQLDGLKWLWSLHCQGKGGILGDDMGLGKTRQICCFLAGLLNSRLIKKALVVVPKTLLPHWIKELSAVGLSEKTRGYNGTSKKAREEGLFQHEGVLLTTYGIVRGYSKSLTKHRHLRSYDEKSQDNPKWDYVILDEAHYIKNPKTQRAKSLLEIPCPHRIVVSGTPWQNDLKEMWALFNFCCPGLLGDKEWFEEKFEWPILWGRDRRASKEAKRLASSSAKELRDLIHPFFLSRQKSEVGEVKISNKQDIVVWLRLTNIQRQLYKKCLKSVNYKTIYGAPFAAIEMMKKICDHPLLLFKRNLSGGKYRKLLNLAEADLADSLAMRMKGVGDAYKFKDISCKTSFIMSLLGNLIPQGHYVIIFSGRLKMLDLIQKSLLSEGYKFLRIDGTTKVKDRTKIVSDFQNDVAPIFLLSSKVGGLGLTLTRADRVIVAGPDWNPSTDNQIVDRAYRIGQTKDVVAYRLITCGTFEEKAYRKQVFKDGLCKTAKEHKEQNRYFSRRDLKYLFSLPEKGFDVSVTQQQLERKHDWQKTMDESFKEHIEFLKSLGIAGVSHHSVLFSKEALDEDEPENDKAPRAECGSDLLARKHFLERKSRFRKLDWAGRFAQDSNEWNHSGKQKTFQTKLRNQVDEFKLKSRSQLDVEVNRRDVEISSSTGRKTKHTQCQTRKSNESIIPRLIDRARRLFKIMR 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral970g00010 863 Pfam SNF2-related domain 187 470 IPR000330 GO:0005524|GO:0140658
Pral970g00010 863 Pfam Helicase conserved C-terminal domain 520 628 IPR001650 -
Pral970g00010 863 SMART helicmild6 546 628 IPR001650 -
Pral970g00010 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 410 IPR027417 -
Pral970g00010 863 SMART ultradead3 170 371 IPR014001 -
Pral970g00010 863 CDD SF2_C_SNF 512 639 - -
Pral970g00010 863 Gene3D - 422 716 IPR027417 -
Pral970g00010 863 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 520 678 IPR001650 -
Pral970g00010 863 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 360 IPR014001 -
Pral970g00010 863 Gene3D - 143 409 IPR038718 -
Pral970g00010 863 PANTHER SNF2/RAD54 FAMILY MEMBER 27 837 - -
Pral970g00010 863 MobiDBLite consensus disorder prediction 30 60 - -
Pral970g00010 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 683 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral970g00010 Pral-Chr970 144399 152240 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral970g00010 536 683 RAD5 or RAD16-like Gene Family AT5G05130 36.601 5.59e-21 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral970g00010 SNF2_N 1.3e-47 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral970g00010 K20093 - gmx:100779283 760.37