LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral970g00006	ATGACAAGCTTTTATGATACTGAGAAGAAGGGCAGCAATTGGTTCGACAATGGCAAAGAGGTTATACGTGGGAAGCCAGAAAAAGGTTTGAGGCCAAAGCGATCAACCATTGAATCTGAGTCTCTTGCTTTTGAGCGAGCAAAAGAAGTTCAAGCAAATCTATCCATTCAATTTCCAAGCCTTATCAAGTTCATGCTCCCATCACATGTTTCTGGTGGATTTTGGCTAGGTCTTCCTAAACCTTTCTGTAAAACGCATTTGCCGAAGGTTGATACTACAATTGTTTTGGAAGATGAGAGTGGAAGAGAATACGAAACAAAATATCTTGCCGACAAGGTGGGCTTAAGTGGTGGATGGAGAGGCTTCTCCACGGCTCACAATTTACGTAAGGGAGATGTTTTGGTTTTCCATTTAATCCATCCTTGCAAGTTCAAGGTATACATCATACGATCTCATGGGGCAAACGAGGTGGATGTTGCGCTTAGCCTTCTACATTTAGATGGTTGCGTGAAACAACATGATTCTAATGTTTCTCAAGAAAACGATCCAAGCGATAGCACGATGATATGTGATGCTAACATGCCGTCATTAGAACAACCTGAAAATACTAGTGATCTAGATCAAAATCTTGGCTATGAAGTTTTGAATGGGATAAGATTATCAGGATCTACAATCACTTTCCAACAAGTCACAAGTATTGAGAATTTCAGCATTGTGGTTGATGGTCTGGTACTTGACTCAGAACTATCCAAACACCTCAAGACCAAGTACTATGAACTTTGTTGCAGTCAGGGAATGTTTCTTCATGAGCATCTTCTTGAAGGTCAGAACTGTAAACTTGTTGTTGGAATGATCTGCGAGACCATTAATATTGCCGATGCCATTAGAGCCAGCAAGATCACAACCTCTTCGGATAGTTTTGAGGTGTGGTATAAATCTTTAAAAGCCCTTGAAATGTTCGGCATGAATGTTAGTTTCTTGCTTGCTAGGCTAGAACAACTCATGAGTTTAGCTTCAAAATCCAAGAGGTACACAGAGACGAGAATTAAACGAGATCAAGCCGAGGAGGAAAAGAAAGTTCTTGAACAAAAAATTGAGGAAGTGAAAAAGACCATAAGGAGACTTGATGGTGAGCTTGACTCCCAAAATCAGAACCTTGAGAGATTAGAAGCTGAGTTTCAAGATCTGGCTAAAACTCCCTGGTGA	1206	0.4055	MTSFYDTEKKGSNWFDNGKEVIRGKPEKGLRPKRSTIESESLAFERAKEVQANLSIQFPSLIKFMLPSHVSGGFWLGLPKPFCKTHLPKVDTTIVLEDESGREYETKYLADKVGLSGGWRGFSTAHNLRKGDVLVFHLIHPCKFKVYIIRSHGANEVDVALSLLHLDGCVKQHDSNVSQENDPSDSTMICDANMPSLEQPENTSDLDQNLGYEVLNGIRLSGSTITFQQVTSIENFSIVVDGLVLDSELSKHLKTKYYELCCSQGMFLHEHLLEGQNCKLVVGMICETINIADAIRASKITTSSDSFEVWYKSLKALEMFGMNVSFLLARLEQLMSLASKSKRYTETRIKRDQAEEEKKVLEQKIEEVKKTIRRLDGELDSQNQNLERLEAEFQDLAKTPW	401

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral970g00006	401	CDD	B3_DNA	59	150	IPR003340	GO:0003677
	Pral970g00006	401	Pfam	Protein of unknown function (DUF724)	281	392	IPR007930	-
	Pral970g00006	401	SMART	B3_2	61	152	IPR003340	GO:0003677
	Pral970g00006	401	SUPERFAMILY	DNA-binding pseudobarrel domain	55	152	IPR015300	-
	Pral970g00006	401	ProSiteProfiles	B3 DNA-binding domain profile.	61	152	IPR003340	GO:0003677
	Pral970g00006	401	Coils	Coil	337	399	-	-
	Pral970g00006	401	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED	34	152	IPR044837	-
	Pral970g00006	401	Gene3D	-	36	152	IPR015300	-
	Pral970g00006	401	Pfam	B3 DNA binding domain	62	150	IPR003340	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral970g00006	Pral-Chr970	115893	120578	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral970g00006	43	150	B3 DNA Binding Superfamily	AT3G19184	58.333	1.16e-39	141

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Pral970g00006		DUF724	2.8e-10	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral970g00006	-		-	pcin:129286163	480.33