Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral970g00003 ATGAAAGAAGAGAGTCCTAGCACTCCAAATTTGCCAAGCACGGGCAGTCCTGAAAGCCCTTGTTTTAAATCATCATCATCAACAAACAAAGAACAAGATCGGTTCCTTCCCATCGCAAACGTTGGGAGGATCATGAAGAAAGTGATGCCTGCAAATGGAAAAATCTCAAAGGACGCTAAAGAAACTGTTCAAGAATGTGTTTCTGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGATAAGTGCCAGAGAGAGAAAAGAAAGACCATTAATGGCGATGACATTATCTGGGCCATTACCACACTTGGCTTTGAGGACTATGTGGATCCTTTGAAATCTTACCTTCAGAAATATAGAGAGATAGAAGGAGAGAAGCTTAATATTCCCAAACAACAACGTTCTGATCATCATCATCAACAAAGGCTACAGAATCATCATCATCATCATCAAGAACACAATAATAATGCTAATAGTATTAATTTTAATAATAATAATCTACCTTTAAATAATAGTGTATATTCTTCAACCATTCTCATTCCTCCTCCTCCTCCTCCTCCGCCTCCTTGTGTGACCACCGATCAGACATTTTCCTTACCTTTCTCATCAAATTCAATTCAGAAACAATTACAGCCCCAAGACAATATGGATTCTTCAGTGGGAAATTGGTAA 669 0.3946 MKEESPSTPNLPSTGSPESPCFKSSSSTNKEQDRFLPIANVGRIMKKVMPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYREIEGEKLNIPKQQRSDHHHQQRLQNHHHHHQEHNNNANSINFNNNNLPLNNSVYSSTILIPPPPPPPPPCVTTDQTFSLPFSSNSIQKQLQPQDNMDSSVGNW 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral970g00003 222 ProSitePatterns NF-YB/HAP3 subunit signature. 66 82 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pral970g00003 222 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 24 159 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pral970g00003 222 MobiDBLite consensus disorder prediction 176 195 - -
Pral970g00003 222 SUPERFAMILY Histone-fold 32 156 IPR009072 GO:0046982
Pral970g00003 222 MobiDBLite consensus disorder prediction 1 36 - -
Pral970g00003 222 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 35 99 IPR003958 -
Pral970g00003 222 MobiDBLite consensus disorder prediction 1 34 - -
Pral970g00003 222 FunFam Nuclear transcription factor Y subunit B-3 24 152 - -
Pral970g00003 222 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Pral970g00003 222 PRINTS CCAAT-binding transcription factor subunit A signature 63 81 - -
Pral970g00003 222 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
Pral970g00003 222 MobiDBLite consensus disorder prediction 127 163 - -
Pral970g00003 222 MobiDBLite consensus disorder prediction 177 192 - -
Pral970g00003 222 Gene3D Histone, subunit A 22 162 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral970g00003 Pral-Chr970 89282 89950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral970g00003 1 217 CCAAT-HAP3 Transcription Factor Family AT2G13570 58.667 1.51e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pral970g00003 CBFD_NFYB_HMF 3.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral970g00003 K08065 - tcc:18611900 268.085