Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral96g00007 ATGGAAGCTCCCGACTTCTTGCAGAATCCTCAGCTCTCCACCTCCGACAACAACATGGCCTCCGCCGACTCCTTTGTTGTCGACGACCTCCTTAACTTCTCCAACGTCGACGATGAAACTCTCCTCCCCGACGACGCTTCCCTCCCTTCCCTTCCCGGCAACTCAACCAATTCTTCCACCGTCACCGCCGTTGATGCCTCCCCGGCTAGCCAACCTAATGTTGTCTCCGATATTGACACCCGCAATTTCCACGACCCCCATTTTTCCGGCGATCTCTGCGTCCCCGTGCCGTATGATGATATGGCAGAGCTGGAATGGCTTTCGACGGTGGTGGATGAATCATTTTCAAGCGAGGACCTGCAGAAACTGCAGCTGATATCTGGTATAAAAGCCCGTAACGACGTCGAAACATCCGAAATCACTCAGGAATTCCAGGCCGAAACCAACCGGAGCGTCGTCAACAGCCCCATATTCAACACAGAAGTCTCGGTTCCGGCCAAAGCTCGCAGCAAGCGCTCACGTGGCTCTCCATGCAACTGGACCTCTCGCCTCTTTCTCCTTTCTCCGTCCCCATCTCCATCGCCATCACTATCCTCCACCTCATCTTCCTCAGATCCCGACGCCATCCTTTCCACCGCAAAGAAACCAGGGAAGGCCGCGCCAAGGAGGAAGGACAGCGGCGGCGAGGGCCGCAAGTGCCTGCATTGTGCCACAGATAAGACGCCGCAATGGCGGACCGGGCCCATGGGCCCCAAAACGCTTTGCAACGCGTGCGGGGTGAGGTACAAGTCAGGGCGGCTGGTGCCAGAATACCGGCCGGCGGCGAGCCCAACGTTCGTGCTGACCAAGCATTCAAACTCACACCGGAAGGTAATGGAGCTCCGACGCCAGAAGGAAATGCAGCAACAGCAGCAGCATCATCAGTTTCTGCAACATCCGAATATGATGTTTGAGTTTCATGTGTCCAATGGGGACGATTACTTGATTCATCAACACCTCGGACCTGACTTCAGGCAGCTCATTTAG 1026 0.5585 MEAPDFLQNPQLSTSDNNMASADSFVVDDLLNFSNVDDETLLPDDASLPSLPGNSTNSSTVTAVDASPASQPNVVSDIDTRNFHDPHFSGDLCVPVPYDDMAELEWLSTVVDESFSSEDLQKLQLISGIKARNDVETSEITQEFQAETNRSVVNSPIFNTEVSVPAKARSKRSRGSPCNWTSRLFLLSPSPSPSPSLSSTSSSSDPDAILSTAKKPGKAAPRRKDSGGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMQQQQQHHQFLQHPNMMFEFHVSNGDDYLIHQHLGPDFRQLI 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral96g00007 341 PANTHER GATA TRANSCRIPTION FACTOR 13 305 - -
Pral96g00007 341 Gene3D - 228 310 IPR013088 GO:0006355|GO:0008270
Pral96g00007 341 ProSitePatterns GATA-type zinc finger domain. 233 258 IPR000679 GO:0006355|GO:0043565
Pral96g00007 341 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 228 291 - -
Pral96g00007 341 Pfam GATA zinc finger 233 266 IPR000679 GO:0006355|GO:0043565
Pral96g00007 341 PIRSF Txn_fac_GATA_plant 8 322 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pral96g00007 341 MobiDBLite consensus disorder prediction 218 233 - -
Pral96g00007 341 MobiDBLite consensus disorder prediction 189 233 - -
Pral96g00007 341 CDD ZnF_GATA 232 279 IPR000679 GO:0006355|GO:0043565
Pral96g00007 341 MobiDBLite consensus disorder prediction 44 71 - -
Pral96g00007 341 MobiDBLite consensus disorder prediction 189 209 - -
Pral96g00007 341 ProSiteProfiles GATA-type zinc finger domain profile. 227 263 IPR000679 GO:0006355|GO:0043565
Pral96g00007 341 MobiDBLite consensus disorder prediction 49 71 - -
Pral96g00007 341 SMART GATA_3 227 277 IPR000679 GO:0006355|GO:0043565
Pral96g00007 341 FunFam GATA transcription factor 222 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral96g00007 Pral-Chr96 26937 28643 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral96g00007 25 341 C2C2-Gata Transcription Factor Family AT5G25830 51.775 1.30e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral96g00007 GATA 3.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral96g00007 - - qsa:O6P43_015488 368.622