Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral964g00004 ATGGACGTCGACGAAACTTCTAAACCCAAAGAGGAAAAGCTCTTATTGGTCATGTTAGTGGGAGCACCAGGAAGCGGCAAGTCCACTTTCTGCGAAGAAGTTATGCGTTCTTCTACTCGTGCTTGGGTTCGTGTTTGCCAGGATGCCATTGGAAATGGAAAAGCAGGAAATAAAGCTCAATGTCTAAGCTGTGCTGCTGGAGCATTGAAGGATGGAAAGAATGTGTTTATTGACAGGTGCAATCTTGATAGAGAACAGCGTTCAGGATTCACAGAGCTTGGTGGACCCCAAATAGATGTGCATGCTGTTGTGCTTGATCTTCCTGCAAAGCTTTGTATTTCTCGATCTGTCAAACGAACTGGGCATGAAGGAAATTTACAGGGTGGAAAAGCTGCTGCAGTGGTGAATAGAATGCTTCAAAAGAAAGAGTTGCCTTCGTTAAGTGAAGGGTTTAACCGGATAACATTTTGTCAGACTGAGAGTGATGTCAAAGTGGCTATTAACACGTACAGCACACTTGGGCCACTGGATAAGCTTCCACATGGATGTTTTGGACAGAAAAGTAAAGATTCCAAAGTTCAAGTGGATATAATGAAGTTCTTTAAAAAGGATGAGGTTCCAATTGTTGCTGAGTCTAGAGGGAATAGTGGTGGAAATTTTACTTCTCAAAATAATGAGATGATAGATCCCTGCCGTAAAGATATGGAAAAAGTTTCATCAAATTCAGATAAAGCCAACTTAGAGTCAGTGAATTTAGAAAATATCTCAGTTGGTTCCTCTGTTTCTAATGTTGATCATGCTTTCATGGATGATCCTCCCACTCTGGCATTTCCATCTATTTCAACATCTGATTTCCAATTTGACCATCAGAAGGCAGCTGAGATTATTGTAGAGAAAGTCGCAGAGTTCTCAAATAAGCTTGCGAATGCTAGATTTGTTTTAGTTGACTTGACTCATGGTTCAAAGATTCTGTCATTAGTTAAAGCCAAAGCTGCTCAAAAGAACTTAGACCCCAGAAAGTTTTTTACCCATGTTGGGGATATTACTTGCCTCAAGTCCACGGGAGGCTTGCACTGTGCTGTGATAGCTAATGCTGCCAACTGGCGATTGAAACCTGGAGGTGGAGGGGTCAATGCTGCAATTTTCAAGGCTGCAGGTCCTATCTTGGTGTCTGCAACCAAAGAACGAGCACAATTGCTCTTGCCTGGGCATGCTGTTGCTGTCCCTCTACCATCATCTTCTCCTTTGTTTACTAGGGAGGGAGTAACCCATGTAATACATGTTCTTGGGCCAAATATGAATCCACAAAGGCCAGATTGTCTCAATAATGACTACAATAAAGGCTGCAAGATTCTAAGGGAGGCTTACACTTCACTATTTGAAGCTTTTGCATCAATCCTGAGGACTGGGACAGAGCAAAAGAGCAAGAGAGATGTTGATCATGGATTTGAAAAAAGCAAGAAATACAAGGGAAGTCAGGATGATGTTGAAGGGAACGGAGCTGGTACCAAGGTTGTGAACATAGATCCAAGTAATAAAAAAAATGATGGCAGCTTGAATAAGACATGGGGATCATGGGCTCAAGCTCTTCATCAAATAGCTATGCGTCCTGAGGAGCATAAGAATGAATTGCTTGAAATATCCGAAGATGTAGTTGTGCTGAATGACCTGTATCCTAAGGCACAGAAGCATGTTTTGGTGTTGGCAAGAACTAGAGGCCTCGATTGCCTGGCTGATGTTCAAAATGACCATCTTCACTTGCTAAAGAGGATGCATTCTGTGGGTCTAAAGTGGGCCGAGAAGTTCTTGCATGAGAATGCTTCACTAGTTTTTCGTCTTGGATATCACTCGGCTCCATCAATGCGACAACTTCATTTACATGTTATTAGCCAGGACTTTGACTCAAAACATTTGAAGAACAAGAAGCACTGGAACTCGTTCAACACTGATTTCTTTCGTGACTCAGTAGATGTAATTGATGAGGTCTCTAATCATGGGAAAGCAACCTTGAGAGATGATGACAAGTTGCTGTCCATGGAGTTGAGGTGTCATAGATGTAGAAGTGCACACCCTAACATTCCCAGGTTGAAATCTCATATTAGCAATTGCCAAGCTTCCTTTCCTTCTTGGTTGCTTCAAAACGGTCGTTTGATTCGTGCACAAGATGAAGTTAACATCAGTTCATAA 2187 0.4207 MDVDETSKPKEEKLLLVMLVGAPGSGKSTFCEEVMRSSTRAWVRVCQDAIGNGKAGNKAQCLSCAAGALKDGKNVFIDRCNLDREQRSGFTELGGPQIDVHAVVLDLPAKLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPSLSEGFNRITFCQTESDVKVAINTYSTLGPLDKLPHGCFGQKSKDSKVQVDIMKFFKKDEVPIVAESRGNSGGNFTSQNNEMIDPCRKDMEKVSSNSDKANLESVNLENISVGSSVSNVDHAFMDDPPTLAFPSISTSDFQFDHQKAAEIIVEKVAEFSNKLANARFVLVDLTHGSKILSLVKAKAAQKNLDPRKFFTHVGDITCLKSTGGLHCAVIANAANWRLKPGGGGVNAAIFKAAGPILVSATKERAQLLLPGHAVAVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPDCLNNDYNKGCKILREAYTSLFEAFASILRTGTEQKSKRDVDHGFEKSKKYKGSQDDVEGNGAGTKVVNIDPSNKKNDGSLNKTWGSWAQALHQIAMRPEEHKNELLEISEDVVVLNDLYPKAQKHVLVLARTRGLDCLADVQNDHLHLLKRMHSVGLKWAEKFLHENASLVFRLGYHSAPSMRQLHLHVISQDFDSKHLKNKKHWNSFNTDFFRDSVDVIDEVSNHGKATLRDDDKLLSMELRCHRCRSAHPNIPRLKSHISNCQASFPSWLLQNGRLIRAQDEVNISS 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral964g00004 728 MobiDBLite consensus disorder prediction 474 514 - -
Pral964g00004 728 FunFam aprataxin isoform X2 524 704 - -
Pral964g00004 728 Gene3D - 2 171 IPR027417 -
Pral964g00004 728 Pfam Macro domain 363 438 IPR002589 -
Pral964g00004 728 Gene3D Leucine Aminopeptidase, subunit E, domain 1 214 316 IPR043472 -
Pral964g00004 728 SUPERFAMILY Macro domain-like 323 461 IPR043472 -
Pral964g00004 728 Gene3D - 525 707 IPR036265 -
Pral964g00004 728 SMART YBR022w_8 340 594 IPR002589 -
Pral964g00004 728 MobiDBLite consensus disorder prediction 474 494 - -
Pral964g00004 728 Pfam Scavenger mRNA decapping enzyme C-term binding 531 643 - -
Pral964g00004 728 PANTHER APRATAXIN-RELATED 275 703 - -
Pral964g00004 728 FunFam Transcription factor bHLH140 321 468 - -
Pral964g00004 728 SUPERFAMILY HIT-like 521 687 IPR036265 -
Pral964g00004 728 Pfam C2HE / C2H2 / C2HC zinc-binding finger 648 701 IPR032566 -
Pral964g00004 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 159 IPR027417 -
Pral964g00004 728 ProSitePatterns HIT domain signature. 612 630 IPR019808 -
Pral964g00004 728 FunFam Transcription factor bHLH140 4 172 - -
Pral964g00004 728 SUPERFAMILY Macro domain-like 274 316 IPR043472 -
Pral964g00004 728 ProSiteProfiles Macro domain profile. 328 566 IPR002589 -
Pral964g00004 728 Pfam AAA domain 16 141 - -
Pral964g00004 728 Gene3D Leucine Aminopeptidase, subunit E, domain 1 318 467 IPR043472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral964g00004 Pral-Chr964 25582 30155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral964g00004 5 718 C2H2 Transcription Factor Family AT5G01310 60.000 0.0 870