Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral963g00010 ATGATGGCTGCAAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCAGATGAGAGCTATCATTTTGAGAGGCTGCATATTGAGCCTATTTATGATGCTTTTGTATGTCCACTAACAAAGCAAGTTATGCGTGATCCTGTCACGTTAGAAACTGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGCATTGCACCGTGAGTGGGCGCAAACTAGTTTGCCCTTTGACTCTGAGAGAACTAAAAAGCACAGAACTAAATCCCAGTATTGCTTTGCGTAACACCATTGAAGAGTGGACTGCAAGGAATGATGCAGCACAGCTGGACATGGCTCGGAGGTCATTGAATATGGGTAGCCCTGAAAATGATACATTACAGGCTTTACATTATATCCAACACATCTGCCAAAGAAGTCGGTCTAATAAGCATATGGTCCGCAGTGCGGGGCTTATACCTATGATTGTTGACATGTTGAAGAGCAGTAGCCGTAAGGTTCGTTGTACAGCTTTGGGAGCCCTTAGAATTGTCGTGGAGGAAGACAATGAGAATAAGGAATTGTTGGCTGAAGGGGACACTGTGCGTACAATTGTAAAATTCCTTTCTCATGAGCTCTCTAAAGAAAGAGAGGAAGCTGTCTCTTTGCTTTATGAGCTTTCAAAATCAGAAACTCTGTGCGAGAAGATAGGTTCAATCAATGGGGCTATTCTTATATTAGTTGGAATGACCAGCAGCAAATCAGAAGATATTTTGACAGTTGAGAAGGCTGAAAAAACATTGGAGAATCTGGAAAAGTGTGAGAATAATGTGCGACAGATGGCTGAAAATGGTAGACTGCAGCCTCTTCTGACACAACTGCTTGAAGGTCCACCTGATACCAAACTGGCCATGGCTGGATACCTTGGTGAGCTGGTTTTGAATAATGATGTAAAGGTCCTTGTGGCCAAAACCGTGGGTTCATCTCTGATCAATATAATGAAAAGTGGTAATATGCAGTCTAGGGAAGCTTCGCTGAAAGCTCTTAATCAGATATCATCCTGTGACCCAAGTGCGAAGGTTTTGATAGAGGCTGGAATACTTTCACCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAATCCACTTCCCATGCGACTAAAAGAAGTCTCTGCTACGATTCTTGCCAATGTTGTGAAATCAGGAGAGGACTTCGATTCCATCCCATTTGGGCCGGATCACCAAACCTTGGTTTCAGAGGACATAGTTCATAATCTACTCCATCTTATAAGCAACACTGGTCCGGCTATTGAATGCAAACTTCTCCAAGTCCTTGTTGGACTTACTAGTTCTCCAACTACTGTTCTGAGTGTTGTCACAGCTATCAAAAGCTCTGGTGCTATTATAAGTCTTGTTCAATTTATTGAGGCTCCACAGAAAGATTTGCGTTTAGCGTCTATAAAACTCCTTCAGAATTTGTCTCCCCTCATGGGCCAGGAGTTAGCTGATGCATTACGCGGTTCAGTTGGACAACTGGGCAGTCTAATTAAAGTCATATCAGACAATACAGGAATTAGTGAAGAGCAGGCTGCAGCTGTTGGCCTGCTAGCTGATCTGCCTGAGAGGGATTTGGGGCTCACGAGACAGATGCTAGATGAAGGTGCCTTTCAGCTGGTCTACTCTAGAGTGATTGCCATTAGGCAGGGAGAGATCAGAGGCAGTCGCTTTGTGACACCATTTCTTGAAGGGCTTGTGAAGATTCTTGCAAGGCTTACCTATGTATTGGCTGATGAGCCTGATGCTATATCATTCTGCCGTGAGCATAGTCTTGTTGCATTATTTATTGAACTGCTTCAGTCCAATGGACTTGATAATGTACAGATGGTTTCTGCAATTGCTTTGGAGAATCTGTCCCAAGAATCAAAGAATTTAACAAAATTACCTGAGATGCCATCTCCTGGTTTTTGTGCCTCAATATTTCCATGCCTTAGCAAACAGCCTGTCATAACAGGGTTGTGTAGGCTCCACCGAGGGTTATGTTCATTAAAAGAAACATTTTGTCTAATTGAAGGGCAGGCAGTACGTAAGTTAGTAGCTCTCCTGGACCACACAAATGTGAACGTGGTTGAAGCAGCACTGGCAGCTTTATCTACTTTGTTAGACGATGGAGTTGATATTGAACAAGGGGTGATGGTGCTTTTTGAGGCAGAGGGAATTAAGCCTATACTTGAAGTGTTACTTGAGAAACGGACAGAAAACCTGAGGAGGAGGGCAGTTTGGGCAGTTGAGAGATTGTTGCGAACTGATGACATAGCCTATGAAGTTTCTGGTGATCAAAATGTGGGTACTGCACTTGTTGACGCTTTCCAGCATGGTGACTATCGAACTCGACAGATTGCTGAGCGTGCTCTTAAGCATGTGGACAAGATTCCAAACTTTTCAGGGATTTTTCCGAACATGGGATAG 2445 0.4364 MMAASWDGSNDPGSQSDESYHFERLHIEPIYDAFVCPLTKQVMRDPVTLETGQTFEREAIEKWFKHCTVSGRKLVCPLTLRELKSTELNPSIALRNTIEEWTARNDAAQLDMARRSLNMGSPENDTLQALHYIQHICQRSRSNKHMVRSAGLIPMIVDMLKSSSRKVRCTALGALRIVVEEDNENKELLAEGDTVRTIVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSKSEDILTVEKAEKTLENLEKCENNVRQMAENGRLQPLLTQLLEGPPDTKLAMAGYLGELVLNNDVKVLVAKTVGSSLINIMKSGNMQSREASLKALNQISSCDPSAKVLIEAGILSPLVNDLFAVGPNPLPMRLKEVSATILANVVKSGEDFDSIPFGPDHQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTSSPTTVLSVVTAIKSSGAIISLVQFIEAPQKDLRLASIKLLQNLSPLMGQELADALRGSVGQLGSLIKVISDNTGISEEQAAAVGLLADLPERDLGLTRQMLDEGAFQLVYSRVIAIRQGEIRGSRFVTPFLEGLVKILARLTYVLADEPDAISFCREHSLVALFIELLQSNGLDNVQMVSAIALENLSQESKNLTKLPEMPSPGFCASIFPCLSKQPVITGLCRLHRGLCSLKETFCLIEGQAVRKLVALLDHTNVNVVEAALAALSTLLDDGVDIEQGVMVLFEAEGIKPILEVLLEKRTENLRRRAVWAVERLLRTDDIAYEVSGDQNVGTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral963g00010 814 Gene3D - 122 317 IPR011989 -
Pral963g00010 814 Pfam U-box domain 32 105 IPR003613 GO:0004842|GO:0016567
Pral963g00010 814 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Pral963g00010 814 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Pral963g00010 814 SUPERFAMILY RING/U-box 23 111 - -
Pral963g00010 814 SUPERFAMILY ARM repeat 122 445 IPR016024 -
Pral963g00010 814 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 151 193 IPR000225 GO:0005515
Pral963g00010 814 SUPERFAMILY ARM repeat 455 802 IPR016024 -
Pral963g00010 814 Coils Coil 254 277 - -
Pral963g00010 814 Gene3D - 318 487 IPR011989 -
Pral963g00010 814 Pfam Armadillo/beta-catenin-like repeat 142 176 IPR000225 GO:0005515
Pral963g00010 814 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 20 810 - -
Pral963g00010 814 CDD RING-Ubox_PUB 31 88 IPR045210 -
Pral963g00010 814 SMART arm_5 140 180 IPR000225 GO:0005515
Pral963g00010 814 SMART arm_5 348 393 IPR000225 GO:0005515
Pral963g00010 814 SMART arm_5 591 632 IPR000225 GO:0005515
Pral963g00010 814 SMART arm_5 267 307 IPR000225 GO:0005515
Pral963g00010 814 SMART arm_5 718 760 IPR000225 GO:0005515
Pral963g00010 814 SMART arm_5 182 222 IPR000225 GO:0005515
Pral963g00010 814 SMART arm_5 673 714 IPR000225 GO:0005515
Pral963g00010 814 SMART arm_5 447 488 IPR000225 GO:0005515
Pral963g00010 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 116 IPR013083 -
Pral963g00010 814 Gene3D - 574 803 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral963g00010 Pral-Chr963 33600 38527 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral963g00010 3 814 U-box Gene Family AT1G76390 65.356 0.0 1035
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral963g00010 - - gmx:100789746 1387.09