Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral963g00009 ATGGCTCGGAGGTCATTGAATATGGGTAGCCCTGAAAATGATACATTACAGGCTTTACATTATATCCAACACATCTGCCAAAGAAGTCGGTCTAATAAGCATATGGTCCGCAGTGCGGGGCTTATACCTATGATTGTTGACATGTTGAAGAGCAGTAGCCGTAAGGTTCGTTGTACAGCTTTGGGAGCCCTTAGAATTGTCGTGGAGGAAGACAATGAGAATAAGGAATTGTTGGCTGAAGGGGACACTGTGCGTACAATTGTAAAATTCCTTTCTCATGAGCTCTCTAAAGAAAGAGAGGAAGCTGTCTCTTTGCTTTATGAGCTTTCAAAATCAGAAACTCTGTGCGAGAAGATAGGTTCAATCAATGGGGCTATTCTTATATTAGTTGGAATGACCAGCAGCAAATCAGAAGATATTTTGACAGTTGAGAAGGCTGAAAAAACATTGGAGAATCTGGAAAAGTGTGAGAATAATGTGCGACAGATGGCTGAAAATGGTAGACTGCAGCCTCTTCTGACACAACTGCTTGAAGGTCCACCTGATACCAAACTGGCCATGGCTGGATACCTTGGTGAGCTGGTTTTGAATAATGATGTAAAGGTCCTTGTGGCCAAAACCGTGGGTTCATCTCTGATCAATATAATGAAAAGTGGTAATATGCAGTCTAGGGAAGCTTCGCTGAAAGCTCTTAATCAGATATCATCCTGTGACCCAAGTGCGAAGGTTTTGATAGAGGCTGGAATACTTTCACCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAATCCACTTCCCATGCGACTAAAAGAAGTCTCTGCTACGATTCTTGCCAATGTTGTGAAATCAGGAGAGGACTTCGATTCCATCCCATTTGGGCCGGATCACCAAACCTTGGTTTCAGAGGACATAGTTCATAATCTACTCCATCTTATAAGCAACACTGGTCCGGCTATTGAATGCAAACTTCTCCAAGTCCTTGTTGGACTTACTAGTTCTCCAACTACTGTTCTGAGTGTTGTCACAGCTATCAAAAGCTCTGGTGCTATTATAAGTCTTGTTCAATTTATTGAGGCTCCACAGAAAGATTTGCGTTTAGCGTCTATAAAACTCCTTCAGAATTTGTCTCCCCTCATGGGCCAGGAGTTAGCTGATGCATTACGCGGTTCAGTTGGACAACTGGGCAGTCTAATTAAAGTCATATCAGACAATACAGGAATTAGTGAAGAGCAGGCTGCAGCTGTTGGCCTGCTAGCTGATCTGCCTGAGAGGGATTTGGGGCTCACGAGACAGATGCTAGATGAAGGTGCCTTTCAGCTGGTCTACTCTAGAGTGATTGCCATTAGGCAGGGAGAGATCAGAGGCAGTCGCTTTGTGACACCATTTCTTGAAGGGCTTGTGAAGATTCTTGCAAGGCTTACCTATGTATTGGCTGATGAGCCTGATGCTATATCATTCTGCCGTGAGCATAGTCTTGTTGCATTATTTATTGAACTGCTTCAGTCCAATGGACTTGATAATGTACAGATGGTTTCTGCAATTGCTTTGGAGAATCTGTCCCAAGAATCAAAGAATTTAACAAAATTACCTGAGATGCCATCTCCTGGTTTTTGTGCCTCAATATTTCCATGCCTTAGCAAACAGCCTGTCATAACAGGGTTGTGTAGGCTCCACCGAGGGTTATGTTCATTAAAAGAAACATTTTGTCTAATTGAAGGGCAGGCAGTACGTAAGTTAGTAGCTCTCCTGGACCACACAAATGTGAACGTGGTTGAAGCAGCACTGGCAGCTTTATCTACTTTGTTAGACGATGGAGTTGATATTGAACAAGGGGTGATGGTGCTTTTTGAGGCAGAGGGAATTAAGCCTATACTTGAAGTGTTACTTGAGAAACGGACAGAAAACCTGAGGAGGAGGGCAGTTTGGGCAGTTGAGAGATTGTTGCGAACTGATGACATAGCCTATGAAGTTTCTGGTGATCAAAATGTGGGTACTGCACTTGTTGACGCTTTCCAGCATGGTGACTATCGAACTCGACAGATTGCTGAGCGTGCTCTTAAGCATGTGGACAAGATTCCAAACTTTTCAGGGATTTTTCCGAACATGGGATAG 2112 0.4351 MARRSLNMGSPENDTLQALHYIQHICQRSRSNKHMVRSAGLIPMIVDMLKSSSRKVRCTALGALRIVVEEDNENKELLAEGDTVRTIVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSKSEDILTVEKAEKTLENLEKCENNVRQMAENGRLQPLLTQLLEGPPDTKLAMAGYLGELVLNNDVKVLVAKTVGSSLINIMKSGNMQSREASLKALNQISSCDPSAKVLIEAGILSPLVNDLFAVGPNPLPMRLKEVSATILANVVKSGEDFDSIPFGPDHQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTSSPTTVLSVVTAIKSSGAIISLVQFIEAPQKDLRLASIKLLQNLSPLMGQELADALRGSVGQLGSLIKVISDNTGISEEQAAAVGLLADLPERDLGLTRQMLDEGAFQLVYSRVIAIRQGEIRGSRFVTPFLEGLVKILARLTYVLADEPDAISFCREHSLVALFIELLQSNGLDNVQMVSAIALENLSQESKNLTKLPEMPSPGFCASIFPCLSKQPVITGLCRLHRGLCSLKETFCLIEGQAVRKLVALLDHTNVNVVEAALAALSTLLDDGVDIEQGVMVLFEAEGIKPILEVLLEKRTENLRRRAVWAVERLLRTDDIAYEVSGDQNVGTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral963g00009 703 SUPERFAMILY ARM repeat 12 334 IPR016024 -
Pral963g00009 703 Gene3D - 463 692 IPR011989 -
Pral963g00009 703 SUPERFAMILY ARM repeat 343 691 IPR016024 -
Pral963g00009 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 40 82 IPR000225 GO:0005515
Pral963g00009 703 SMART arm_5 29 69 IPR000225 GO:0005515
Pral963g00009 703 SMART arm_5 71 111 IPR000225 GO:0005515
Pral963g00009 703 SMART arm_5 237 282 IPR000225 GO:0005515
Pral963g00009 703 SMART arm_5 480 521 IPR000225 GO:0005515
Pral963g00009 703 SMART arm_5 156 196 IPR000225 GO:0005515
Pral963g00009 703 SMART arm_5 607 649 IPR000225 GO:0005515
Pral963g00009 703 SMART arm_5 336 377 IPR000225 GO:0005515
Pral963g00009 703 SMART arm_5 562 603 IPR000225 GO:0005515
Pral963g00009 703 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 699 - -
Pral963g00009 703 Coils Coil 143 166 - -
Pral963g00009 703 Gene3D - 210 376 IPR011989 -
Pral963g00009 703 Pfam Armadillo/beta-catenin-like repeat 31 65 IPR000225 GO:0005515
Pral963g00009 703 Gene3D - 9 209 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral963g00009 Pral-Chr963 18060 38527 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral963g00009 1 703 U-box Gene Family AT1G20780 66.335 0.0 892
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral963g00009 - - gmx:100815928 1188.33