Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral960g00106 ATGGCGGACTCGGATAACGATTCCGGAGGGGCGCAGAACACGGGAGCCAATGCAAACAGCAGCGAATTGTCGCCGCGAGAGCAGGACCGGTTCCTACCTATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTTCCGGCGAATGCGAAGATCTCAAAGGACGCGAAGGAGACAGTGCAAGAGTGCGTATCGGAGTTCATCAGCTTCATCACCGGAGAGGCCTCCGATAAGTGCCAGAGGGAGAAGCGGAAGACCATCAACGGGGACGACTTACTCTGGGCGATGACCACGCTGGGATTTGAGGACTACGTGGAGCCACTCAAGATTTACTTGCAGAGGTTCAGGGAAATGGAGGGAGAGAAGAGCGTGGTGGCGGCGCGTGACAAGGAAGGAGGTGGCGCTTCCATTAGTGCTTTTGACGGCAGTGGCGGGGTGTACGGGGGTAGCGGAGGTGGAATGGGAATGATGATGCATCAAGGACACGTGTACGGATCTGGTGGCTTTCATCAAATGGGCGTTAGTGGTGGTCCTGCTATGGGTAAGAGCGGGCCAACTTATCCGGGTCCTGGATCTAACTCGGGTAGACCCAGATAG 594 0.564 MADSDNDSGGAQNTGANANSSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREMEGEKSVVAARDKEGGGASISAFDGSGGVYGGSGGGMGMMMHQGHVYGSGGFHQMGVSGGPAMGKSGPTYPGPGSNSGRPR 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral960g00106 197 MobiDBLite consensus disorder prediction 1 26 - -
Pral960g00106 197 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Pral960g00106 197 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Pral960g00106 197 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Pral960g00106 197 MobiDBLite consensus disorder prediction 173 197 - -
Pral960g00106 197 FunFam Nuclear transcription factor Y subunit B-3 20 140 - -
Pral960g00106 197 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 127 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pral960g00106 197 MobiDBLite consensus disorder prediction 1 28 - -
Pral960g00106 197 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pral960g00106 197 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Pral960g00106 197 SUPERFAMILY Histone-fold 28 125 IPR009072 GO:0046982
Pral960g00106 197 Gene3D Histone, subunit A 19 137 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral960g00106 Pral-Chr960 657921 659257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral960g00106 1 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.091 3.83e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pral960g00106 CBFD_NFYB_HMF 1.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral960g00106 K08065 - qsa:O6P43_013552 312.383