Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral960g00096 ATGGCCACAAATGATCGCCGTTTTGTAGAATGGAAGGAGCAGTTTATTTCACAGGAGCGTGGCAATCGTGTAGTCCACTATTACCTTAAGGATTCTGCTGGGGATTCAATACTTGCAGTTGTGGGCACTGAGAGGAGCCTGAGACACATGTTCTATGTTGTTGCTGATGAGTTTCTTGAAGTTTGTGGGAAGGAGGGTGCCAACCATGCTGGTTTCAAATGGAGGTCCAGAAGAGAGGTGGTAGATTGGTTGACATCGATGCTATCAAAGCAGCATCAGCTGGGAGACAAGAGTGTATTGCCAAGTCATAACTTGACACAAACTCATGAGATCACGAATGGCAGTCTCAAAGAATTTATTGATCTGCATACAAAGATATCAGATAAGGGCCTTCTTATGAGCAACTTCAAAGGACAAAATTCTGACATTGTTTGGTCAGGCGCTGCCTGGACATGTGGGAAACAGCTTAAACATTATCCTGCTTTTTACAGGAATGGGATCGAAATAGCAACTCAATCTTTCGTTTTCGTCATGGCAACGGGAGAGAATCATTATGTTGCATATTTGGAAGACATGTACGAAGACAGGAGGGGTCAGAAAAAGGTTAAAGTGAGGTGGTTTCACCATAATCAGGAAGTCAAAGGTGTAATTCCCGTGAGAAATCCTCACCCTCAAGAAGTTTTTATCACATCTTATTCTCAAGTAATTAGTGCTGAGTGTGTTGATGGCCCTGCCACAGTCTTAACTCGGGAACATTATGAAAAGCTCTTGCCTGCTTTTTCTCCTGCCTCATCAAATAGAATCCATTTGTGCTTTAGGCAATTCCGAAACAACAAAGTGAAGCCCTTTGACTTGAGTAAATTGCGTGGCTACCACAATCAACCAGTTCTCTCTTGCTTGAACCTTGATTCCTTCCAAAATCCTAAATGTAATAACCTTGCGGAAGAAGATGAAGAGTTGAGCCTAGGAGATGATGTAAGGCCTGAAGCTAAGAGGAACAAAAGAAGTAGGGGGTCTTCTCAGCATTCGGTAGATCACCAGGGAGTTAGGAAATTAAGTAGAAGTCAGAAAATGATGGTGGGCAAAACCATCGAGAATGTAGATTATGCTAGGCCGGATAGGAGATTGCTTTCTGGGAAACAGGTTGATTATCAGCCCTGGTATAACTCCAAATACAAGGTTGATGACAAGATAGAGTTACTCTGTCAAGACAGTGGCATCAGAGGCTGCTGGTTCAGGTGTACAGTGGTGCAAGTATCCCGGAAACAGATAAAAGTCCAATATAACGACGTGCAGGATGAAGATGGAGGTGGCAATCTTGAGGAATGGATACCTGCTTTTAAACTTGCCATGCCCGATAAACTTGGGATGAGACATTCAGGCCGGCCCACCATCAGGCCAGCCCCAACTTGTGAGGGTCAGCAAGAACTGACTGCTGAAATTGGAACTGCAGTAGATGCATGGTGGAGTGATGGTTGGTGGGAGGGGGTTGTGAGTGGAATTGACAACGTTGATGATGCTAATGTGCAAGTTTACTTTCCTGGTGAAGGTCTGTTGAGGAAAGTATGCAAGAAGGATCTAAGAGTATCTCGAGACTGGCTGGGGGACCGATGGGTTGATATTGAGCTAAAGCCTAATGTAGCCTCTACTATATTTGCAGTTAATAGCTCTAACACAAAGTTTTCAGAGTCCCCCTCTACCACTAAAGATGTTGACTCTTCTGGGGTTGTTGTTTCATGTCAAGATGTTCCTATTAGTGAGAAGTCTAATGAACTAAATGATGTTGCTGAAGACATGAATCAGGTTATTGATAACAAGCCCCCTTCAGAAGAAGAGACAAGTACTGAAGTTGTTGAGACCGAGCAACATGGAAGTTGTGATAACGAAGATAACCGTGATGATGACAGAGACAATAAGGAAGAGAATGATGGCAATGATAACAAAAGGATTGATAATGATGTGAGGGATATGGAGGTGTTTGGGACTTCTGGGGAGGACTCTAAAGCCGTGGAACCCATGGAAGTGGCTGTTTAA 2034 0.4361 MATNDRRFVEWKEQFISQERGNRVVHYYLKDSAGDSILAVVGTERSLRHMFYVVADEFLEVCGKEGANHAGFKWRSRREVVDWLTSMLSKQHQLGDKSVLPSHNLTQTHEITNGSLKEFIDLHTKISDKGLLMSNFKGQNSDIVWSGAAWTCGKQLKHYPAFYRNGIEIATQSFVFVMATGENHYVAYLEDMYEDRRGQKKVKVRWFHHNQEVKGVIPVRNPHPQEVFITSYSQVISAECVDGPATVLTREHYEKLLPAFSPASSNRIHLCFRQFRNNKVKPFDLSKLRGYHNQPVLSCLNLDSFQNPKCNNLAEEDEELSLGDDVRPEAKRNKRSRGSSQHSVDHQGVRKLSRSQKMMVGKTIENVDYARPDRRLLSGKQVDYQPWYNSKYKVDDKIELLCQDSGIRGCWFRCTVVQVSRKQIKVQYNDVQDEDGGGNLEEWIPAFKLAMPDKLGMRHSGRPTIRPAPTCEGQQELTAEIGTAVDAWWSDGWWEGVVSGIDNVDDANVQVYFPGEGLLRKVCKKDLRVSRDWLGDRWVDIELKPNVASTIFAVNSSNTKFSESPSTTKDVDSSGVVVSCQDVPISEKSNELNDVAEDMNQVIDNKPPSEEETSTEVVETEQHGSCDNEDNRDDDRDNKEENDGNDNKRIDNDVRDMEVFGTSGEDSKAVEPMEVAV 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral960g00096 677 SMART agenet_At_2 390 455 IPR014002 -
Pral960g00096 677 SMART agenet_At_2 477 535 IPR014002 -
Pral960g00096 677 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 391 617 - -
Pral960g00096 677 MobiDBLite consensus disorder prediction 324 341 - -
Pral960g00096 677 MobiDBLite consensus disorder prediction 316 355 - -
Pral960g00096 677 SMART BAH_4 167 286 IPR001025 GO:0003682
Pral960g00096 677 MobiDBLite consensus disorder prediction 604 677 - -
Pral960g00096 677 Gene3D - 135 299 IPR043151 -
Pral960g00096 677 ProSiteProfiles BAH domain profile. 167 286 IPR001025 GO:0003682
Pral960g00096 677 MobiDBLite consensus disorder prediction 609 662 - -
Pral960g00096 677 Coils Coil 585 605 - -
Pral960g00096 677 CDD Tudor_Agenet_AtDUF_rpt1_3 392 469 - -
Pral960g00096 677 Pfam Agenet domain 395 469 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral960g00096 Pral-Chr960 602802 607205 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral960g00096 404 533 PHD Transcription Factor Family AT5G58610 27.820 6.29e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral960g00096 - - pcin:129318488 1194.49