Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral960g00058 ATGGAATCAGATCTTGGCAAGCTTTTCATTGGAGGAATTTCTTGGGACACTGATGAAGAACGACTTAAAGAATATTTTGGGAAATACGGAGAGGTGATAGAGGCCGTGATCATGAGAGATCGTACGACAGGTCGTGCTCGTGGTTTTGGTTTTGTAGTGTTTGCTGATCCTGCTATTGCAGAAAGAGTCATTATGGAAAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCCAGGGATGATCAGCAGATGATAAATAGAACTTCTGGTAGTGTCCATGGCTCTCCTGGTCCCGGGCGCACAAAAAAGATTTTTGTTGGGGGTCTGCCTTCGAGCATCACTGAAAGTGAATTTAAGAAGTATTTTGATCAGTTTGGTACAATCAATGATGTTGTAGTAATGTATGATCACAATACTCAGAGGCCAAGAGGCTTTGGCTTCATCACTTATGATTCAGAAGATGCTGTGGACAGAGTTCTTCATAAAACATTCCATGAACTCAATGGAAAAATGGTTGAGGTCAAGAGGGCTGTTCCGAAAGAGCTTTCCCCTGGATCCATCCGAAGCCCATTGTTAGGAACTAATTTTGGCTTCAATAGGTCCAGTAGCTACCTAAACAGTTACGCACAGAGCTATAACATGAGTCCAGTTGGAGGCTATGGGATGAGGATGGATGGTAGGTTCAGTCCTCTGACAAATAGTAGGAGTGGAATTTCTCCCTTTGGCAGCAGCAGTTACGGGATGGGACTGAATCTAGATGCAGGGCTGAGTGCAGGATATGGTGGGACCTCAAATTATGGAAGCAATCTCGGATATGGTCGGGTGATTAGTCCTTTTTACAGTGGCAGCTCAAGCAGATATACCACTCCTATAGGCTATAATGCTGGTAGTGGGAGAAGCGATTCTCTAATGAATTCACCTTCTCGAAATGTCTGGGGAAATGGTGGCCTAAGTAATGCCAATAACCAAGTCAATGCTGGTGCTAGCTTGGGATCTGGAAGTGGTGGTTTTGGCGTTCCAATTAAAAATAGTGGAACAAATTGGGGTCAATCCTTTCCAGTGCAGGGTGGAGTGCCTGCTTCGGGATATACCTCTGGGATTAATGTTTATGAAGGTGGAGACAACAGTTTTGGGGTAGGTGGTACTGGTTATGGAAGAAATGGGAGTGTAGGTGTAAATTCATCTTCTACATTTTCTGCTTCAGCCGGTGGTTATGAAGGATCCTATGGAGATTTATACCATAACGGTTCAGTTTACAATGACTCAACTTGGCGGTCTGCTGTTTCTGACCTTGATGGTTCTGGTTCATTTGATTATGGACTTGGTGGCATAGCCTCTGAGGATCCAGCAAAGACTTCAGAGGGTTATATTGGAAACTACAGTGTTTCAAGCAGACAACCTAACAGAGGAATTGCTGCCTAG 1434 0.4414 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAIAERVIMEKHIIDGRTVEAKKAVPRDDQQMINRTSGSVHGSPGPGRTKKIFVGGLPSSITESEFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLHKTFHELNGKMVEVKRAVPKELSPGSIRSPLLGTNFGFNRSSSYLNSYAQSYNMSPVGGYGMRMDGRFSPLTNSRSGISPFGSSSYGMGLNLDAGLSAGYGGTSNYGSNLGYGRVISPFYSGSSSRYTTPIGYNAGSGRSDSLMNSPSRNVWGNGGLSNANNQVNAGASLGSGSGGFGVPIKNSGTNWGQSFPVQGGVPASGYTSGINVYEGGDNSFGVGGTGYGRNGSVGVNSSSTFSASAGGYEGSYGDLYHNGSVYNDSTWRSAVSDLDGSGSFDYGLGGIASEDPAKTSEGYIGNYSVSSRQPNRGIAA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral960g00058 477 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Pral960g00058 477 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pral960g00058 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Pral960g00058 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Pral960g00058 477 SUPERFAMILY RNA-binding domain, RBD 105 207 IPR035979 GO:0003676
Pral960g00058 477 Gene3D - 6 88 IPR012677 -
Pral960g00058 477 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Pral960g00058 477 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Pral960g00058 477 CDD RRM2_Hrp1p 107 184 - -
Pral960g00058 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Pral960g00058 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pral960g00058 477 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 473 - -
Pral960g00058 477 Gene3D - 103 189 IPR012677 -
Pral960g00058 477 SMART rrm1_1 107 179 IPR000504 GO:0003723
Pral960g00058 477 SMART rrm1_1 7 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral960g00058 Pral-Chr960 362162 366206 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral960g00058 2 242 Eukaryotic Initiation Factors Gene Family AT2G36660 28.235 5.67e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral960g00058 K14411 - gmx:100805131 780.015