Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral960g00058 | ATGGAATCAGATCTTGGCAAGCTTTTCATTGGAGGAATTTCTTGGGACACTGATGAAGAACGACTTAAAGAATATTTTGGGAAATACGGAGAGGTGATAGAGGCCGTGATCATGAGAGATCGTACGACAGGTCGTGCTCGTGGTTTTGGTTTTGTAGTGTTTGCTGATCCTGCTATTGCAGAAAGAGTCATTATGGAAAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCCAGGGATGATCAGCAGATGATAAATAGAACTTCTGGTAGTGTCCATGGCTCTCCTGGTCCCGGGCGCACAAAAAAGATTTTTGTTGGGGGTCTGCCTTCGAGCATCACTGAAAGTGAATTTAAGAAGTATTTTGATCAGTTTGGTACAATCAATGATGTTGTAGTAATGTATGATCACAATACTCAGAGGCCAAGAGGCTTTGGCTTCATCACTTATGATTCAGAAGATGCTGTGGACAGAGTTCTTCATAAAACATTCCATGAACTCAATGGAAAAATGGTTGAGGTCAAGAGGGCTGTTCCGAAAGAGCTTTCCCCTGGATCCATCCGAAGCCCATTGTTAGGAACTAATTTTGGCTTCAATAGGTCCAGTAGCTACCTAAACAGTTACGCACAGAGCTATAACATGAGTCCAGTTGGAGGCTATGGGATGAGGATGGATGGTAGGTTCAGTCCTCTGACAAATAGTAGGAGTGGAATTTCTCCCTTTGGCAGCAGCAGTTACGGGATGGGACTGAATCTAGATGCAGGGCTGAGTGCAGGATATGGTGGGACCTCAAATTATGGAAGCAATCTCGGATATGGTCGGGTGATTAGTCCTTTTTACAGTGGCAGCTCAAGCAGATATACCACTCCTATAGGCTATAATGCTGGTAGTGGGAGAAGCGATTCTCTAATGAATTCACCTTCTCGAAATGTCTGGGGAAATGGTGGCCTAAGTAATGCCAATAACCAAGTCAATGCTGGTGCTAGCTTGGGATCTGGAAGTGGTGGTTTTGGCGTTCCAATTAAAAATAGTGGAACAAATTGGGGTCAATCCTTTCCAGTGCAGGGTGGAGTGCCTGCTTCGGGATATACCTCTGGGATTAATGTTTATGAAGGTGGAGACAACAGTTTTGGGGTAGGTGGTACTGGTTATGGAAGAAATGGGAGTGTAGGTGTAAATTCATCTTCTACATTTTCTGCTTCAGCCGGTGGTTATGAAGGATCCTATGGAGATTTATACCATAACGGTTCAGTTTACAATGACTCAACTTGGCGGTCTGCTGTTTCTGACCTTGATGGTTCTGGTTCATTTGATTATGGACTTGGTGGCATAGCCTCTGAGGATCCAGCAAAGACTTCAGAGGGTTATATTGGAAACTACAGTGTTTCAAGCAGACAACCTAACAGAGGAATTGCTGCCTAG | 1434 | 0.4414 | MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAIAERVIMEKHIIDGRTVEAKKAVPRDDQQMINRTSGSVHGSPGPGRTKKIFVGGLPSSITESEFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLHKTFHELNGKMVEVKRAVPKELSPGSIRSPLLGTNFGFNRSSSYLNSYAQSYNMSPVGGYGMRMDGRFSPLTNSRSGISPFGSSSYGMGLNLDAGLSAGYGGTSNYGSNLGYGRVISPFYSGSSSRYTTPIGYNAGSGRSDSLMNSPSRNVWGNGGLSNANNQVNAGASLGSGSGGFGVPIKNSGTNWGQSFPVQGGVPASGYTSGINVYEGGDNSFGVGGTGYGRNGSVGVNSSSTFSASAGGYEGSYGDLYHNGSVYNDSTWRSAVSDLDGSGSFDYGLGGIASEDPAKTSEGYIGNYSVSSRQPNRGIAA | 477 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral960g00058 | 477 | CDD | RRM1_hnRNPA_hnRNPD_like | 8 | 78 | - | - | |
Pral960g00058 | 477 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 5 | 87 | - | - | |
Pral960g00058 | 477 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 74 | IPR000504 | GO:0003723 | |
Pral960g00058 | 477 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 108 | 166 | IPR000504 | GO:0003723 | |
Pral960g00058 | 477 | SUPERFAMILY | RNA-binding domain, RBD | 105 | 207 | IPR035979 | GO:0003676 | |
Pral960g00058 | 477 | Gene3D | - | 6 | 88 | IPR012677 | - | |
Pral960g00058 | 477 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 104 | IPR035979 | GO:0003676 | |
Pral960g00058 | 477 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 103 | 190 | - | - | |
Pral960g00058 | 477 | CDD | RRM2_Hrp1p | 107 | 184 | - | - | |
Pral960g00058 | 477 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 106 | 183 | IPR000504 | GO:0003723 | |
Pral960g00058 | 477 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 82 | IPR000504 | GO:0003723 | |
Pral960g00058 | 477 | PANTHER | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 | 1 | 473 | - | - | |
Pral960g00058 | 477 | Gene3D | - | 103 | 189 | IPR012677 | - | |
Pral960g00058 | 477 | SMART | rrm1_1 | 107 | 179 | IPR000504 | GO:0003723 | |
Pral960g00058 | 477 | SMART | rrm1_1 | 7 | 78 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral960g00058 | Pral-Chr960 | 362162 | 366206 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral960g00058 | 2 | 242 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 28.235 | 5.67e-15 | 75.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral960g00058 | K14411 | - | gmx:100805131 | 780.015 |