Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral960g00032 ATGGAATTGGCGATGGTTGCTGAGGGAACGGAGCCGCCGGAGGAGACGCAATCCGAGGGCTTGCCGGTGAAAAGGGCGATTGAGAATGGTGGGAGTGAGGAATTGGCCAAGAAGCCTAAGGTTGAAGCAGCGGCGGCTGCGGCTGCGGCTGCTGCGTCTAGCGGGGAGTTGAAGAGAGTGGCGGAGCTTGTGCTGGTTTTGTCGACGATGTCGGCAATGCGAGGCGGGAAGAAGCCCACTAATGTGGAGATTGAGTTGATGAAGGAGGCGAGGATGAAGTTGGTGGAGTTGTGTCAAGGGATGGCCCCCAAGGATATTGTGGCAAGGGAAGCTGTGGGGACTGTGATTGAGGATCTTGGATTGAACGGGAAGATTAAAGACCAGGGATTAGGGTTTCAAACTCCAAAGATGTCTATAACCGAAAGGTTCTCACTCTCCAAGTTGAAGATGGAAGAATCAAAGAAGTTTCATGAACATTCTGCTCCATCTACTTCTCAGCCATTGCAAACAAGCATGGGTAGTGGAATGGTTGAAAACCGTATGCCATCTCATACTGTTCGAATGTTTCCTTCGGACAAGTCAAGCCACACAGGAGTCTCGTCTTCTGGTACCATAACTTCTCCTCACGTGACTCATGTTCCTGCTGGATCTTCTTCTGGTTTGCACTATCAGTCAACTACTACTGAAGTAAAATCACCTATAGTTTCTGGCGGAATGCCTAGCAGTCACTTGGGCAGAAATTCATCTTCATCAGCATTGCCTAAAGTTGAACAACCACAGTTCAAAGTTGATGGAGGATCAAGTGGGCCTTATTTGATGCATGCTCAAGCAAATTCTTCAAACCAACCGTTGATGAATGCTCCAACATGGTCAATACAAACTCAAACTCAATCTGGCTCATTAGCTAGGAGTACACCAGAAAACAAAGTGACTGGACATAACCCTGTCAAGGTTGAGGGAATGGGTGACCTAACTGGGCCCAGGGCTGCTTCACAAATAGCTAGGGATCAGGGCTATAGACCCATAGTAACTCAAACATCCCCTGGAAATTTGTCTAGCTTGCACCAACCATTGCAGGGCATGAACATTGTTCAGCCTTCTTCACTTCCTAATAATCACACTGAAATTGCAAGGATTGTCCAGAGACTGTTACAACCAAAGCTGCCTGAGCATCCCACATGGACTCCTCCATCAAGGGATTATATGAATAAGGCATTTACTTGCCAAATGTGTGATCTCACTGTCAATGAAGTGGATACTGTGCTTCTTTGTGACGCTTGTGAAAAAGGGTTTCATTTGAAGTGTTTGCAGCCATCACTTTTAAGAGGAATTCCTAGAGGTGAGTGGCATTGCATGAGGTGCTTGACATTAAGCGGTGGAAAGCCTTTGCCTCCAAAATATGGTCGCGTGATGAGGTCCGCAAACACCCCACCAAAAGTGCCCTCTAATGCAGTTGGAGTCCAACCATCGTTAGAGAAGAAAACTGGAGTTGTAGCTCCAAAGGTCAGCTCACAGGAGTTAACAACAAATGGAGGCTCTGTGTCAACTGATGCCACTGGTAACAATAAAAATGTTGAGCTTCCATCTGTCTCAAAGGTCCCTGATGCAAAAGAAATTCAGGATAACACTCATTCATCAAGCAGCAAACACATGGATGAGAAGCCTGACCCAAATATCTCAATAAAATCCCTTAATGCAGCTTCTAGTCCTGCTGTTGGCATGCCAGGTAATAACAGAAAGGAATCTCATGGGGGAGAAAGTTTGACATATGATATCAAACGTGATGACCAATATGTTGCACTAGCAAATTCTGATAAAAGTTCTGGAACACATGGTGAAGGGAGACAATGCACTGCATTATATTCCGATGGCTTACATGCAGTAGAATGGGTTGGTGATCTTGTGCAACTTGTTGATGAGAAAAGGTTTTACCAATCATGCCAAGTTAATGGAGTTACATATAGGCTGCAGGATCATGCTCTTTTTAAATCCAGTCATGGCAAGCTAATTCCATCTAAACTGCAGTCTATGTTTGAAGATAGCAAAACTGGATTGAAGTGGGTAAATGTGACAAAGTGCTACTTTCCTGGTGATTTACCAGGGAATATCCCTCATCCATGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTGGATCCATTCAAGGTCCCTGTGAAGTCCTCCCGTCTTTTAAATTTCAACAAGAAAACAATAGACGAAGGGGGTTAGAACCTGAGGAAAGTGCTAGACTTCGGCCCATTTTCCTATGCAGATGGTTCTATGATGGAGTCAAAAAATTATTTCAGCCTGTTACCAGTTGA 2343 0.4481 MELAMVAEGTEPPEETQSEGLPVKRAIENGGSEELAKKPKVEAAAAAAAAAASSGELKRVAELVLVLSTMSAMRGGKKPTNVEIELMKEARMKLVELCQGMAPKDIVAREAVGTVIEDLGLNGKIKDQGLGFQTPKMSITERFSLSKLKMEESKKFHEHSAPSTSQPLQTSMGSGMVENRMPSHTVRMFPSDKSSHTGVSSSGTITSPHVTHVPAGSSSGLHYQSTTTEVKSPIVSGGMPSSHLGRNSSSSALPKVEQPQFKVDGGSSGPYLMHAQANSSNQPLMNAPTWSIQTQTQSGSLARSTPENKVTGHNPVKVEGMGDLTGPRAASQIARDQGYRPIVTQTSPGNLSSLHQPLQGMNIVQPSSLPNNHTEIARIVQRLLQPKLPEHPTWTPPSRDYMNKAFTCQMCDLTVNEVDTVLLCDACEKGFHLKCLQPSLLRGIPRGEWHCMRCLTLSGGKPLPPKYGRVMRSANTPPKVPSNAVGVQPSLEKKTGVVAPKVSSQELTTNGGSVSTDATGNNKNVELPSVSKVPDAKEIQDNTHSSSSKHMDEKPDPNISIKSLNAASSPAVGMPGNNRKESHGGESLTYDIKRDDQYVALANSDKSSGTHGEGRQCTALYSDGLHAVEWVGDLVQLVDEKRFYQSCQVNGVTYRLQDHALFKSSHGKLIPSKLQSMFEDSKTGLKWVNVTKCYFPGDLPGNIPHPCISEVNEVYESNSDRTEMAGSIQGPCEVLPSFKFQQENNRRRGLEPEESARLRPIFLCRWFYDGVKKLFQPVTS 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral960g00032 780 MobiDBLite consensus disorder prediction 501 528 - -
Pral960g00032 780 ProSitePatterns Zinc finger PHD-type signature. 408 454 IPR019786 -
Pral960g00032 780 ProSiteProfiles Zinc finger PHD-type profile. 405 457 IPR019787 -
Pral960g00032 780 ProSiteProfiles BAH domain profile. 652 779 IPR001025 GO:0003682
Pral960g00032 780 Pfam PHD-finger 408 455 IPR019787 -
Pral960g00032 780 MobiDBLite consensus disorder prediction 1 34 - -
Pral960g00032 780 MobiDBLite consensus disorder prediction 537 557 - -
Pral960g00032 780 MobiDBLite consensus disorder prediction 494 586 - -
Pral960g00032 780 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 468 IPR013083 -
Pral960g00032 780 SUPERFAMILY FYVE/PHD zinc finger 398 462 IPR011011 -
Pral960g00032 780 Gene3D - 631 780 IPR043151 -
Pral960g00032 780 MobiDBLite consensus disorder prediction 299 324 - -
Pral960g00032 780 CDD BAH 651 779 - -
Pral960g00032 780 MobiDBLite consensus disorder prediction 152 173 - -
Pral960g00032 780 SMART PHD_3 407 455 IPR001965 -
Pral960g00032 780 MobiDBLite consensus disorder prediction 190 255 - -
Pral960g00032 780 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 18 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral960g00032 Pral-Chr960 236763 243292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral960g00032 407 455 C2H2 Transcription Factor Family AT3G01460 42.857 1.87e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral960g00032 PHD 9.4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral960g00032 - - aip:107609239 891.723