Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral960g00012 ATGGCTAGTGAAGAGGAGAGACATCTGGAAACTCAACTAGAGCTCCAATTGCAGGAACAGAGGGATTCACTCTCTGCACTCAATGAAGCTTTGGTTTCTGATCCATCCAATCCCGAGCTTCTTGCGGTTCATGAGGAGCTTGTTCAGGCAATCAAGGATGCAGAGGAAGGGCTTCTTCACTTAAAGCGTACTCGATTATTGCATGAAGCGGATTCAGTCCTGTATAGATCTAATCTTTCTGCTCAAGCAGAGAAAGTTGAGCCACTTGATCCTGCAGATGTTGAACCAGAACCTTTAGAGGAACAACATTATTCTGTTGGATCTAAGTGTAGATTTCGTCACACTAATGGTCGTTGGTACATTGGTCAAGTGGTGCAGTTAAATAGTTCTTCAGCAAAAATGTCATTCCTGATGCCTACGTCTGAGAATATGCTGATGTGCAAGTTTTTTCTGCAACAACGATGTCGCTTTGGTGCTAACTGTCGTCTATCACATGGTATTGATGTTCCACTGTCTTCCCTCAGAAAATATGTTCCTACCATCTGGAAGCAGTCCCTGGTTGGTTCAAGTATATGGGCAGTCTCAGACGTTAATGCTGGCATTTGGAAGGAAGCTGAGCTTGAATCCTGGGATGAAGAACTTGGAGTTGGACAAGTTGTTTTCCGAGATGATGGAAGTTCTGTGAAGTTAGGAGCAGAAGCTATAGCATTATCTGAATGTGCAGAAGTTAGTGATGAAGAGAGTGATTCCAGCTCAGAACAGTCTGATTTTAGTGACTATGAAGAAGGTGGCCCCCAAGGTTTAGGCTTTCTGGAAAGCACCAACTTGCAGCGGGGTATTCAGACTGAAACTGCTATATTTGCCAAATGGGAGAATCACACCAGGGGCGTAGCTTCCAAAATGATGGCCAATATGGGTTATCGTGAAGGTATGGGTTTAGGTGTTTCTGGTCAAGGAATGATTAATCCCATCCCAGTGAAGGTCCTTCCACCAAAGCAATCGTTAGATCATGCTCTTGAATCTCATAAAGATAAAGGAGAAGAGAGCAAAGACAATCAAGGTAAGAAACGGAGTAGAGGTGGTAAGAGAAAACGTGATAAGAAATTTGCAGAGGCAATTCGGGTAGCAAAAGAAGAGGAGGAAGCGGTATCAGATGTCTTTACACTAATAAATAATCAGCTGGCAATGCATGGTGAAGCTATAAATGGTGGATCAGCGAGGAAGCAGCAAGGTAAAGGTTCAGGGGAAGGTAAAAAGGTTGATAGGAGGGCTTTGATTGCTTATGAGGATGAGGTCAATGACTTAAGGATTCGGGTTGCGAAACTCGAAGAAATGGTGAATAGAAACAGGAGAGAGAAGGCAGTTTATGAGGCTGCTACGAGAAAGTTGATTGAAACCCGCAAGGCTTTAGCTGAGACTGAAGCAGCCCATGTCTCCGCCTCAAATGCAGTGGTTAGCAAAGAAAAAGAGAAGAGATGGCTTAAGTTTTAG 1491 0.4373 MASEEERHLETQLELQLQEQRDSLSALNEALVSDPSNPELLAVHEELVQAIKDAEEGLLHLKRTRLLHEADSVLYRSNLSAQAEKVEPLDPADVEPEPLEEQHYSVGSKCRFRHTNGRWYIGQVVQLNSSSAKMSFLMPTSENMLMCKFFLQQRCRFGANCRLSHGIDVPLSSLRKYVPTIWKQSLVGSSIWAVSDVNAGIWKEAELESWDEELGVGQVVFRDDGSSVKLGAEAIALSECAEVSDEESDSSSEQSDFSDYEEGGPQGLGFLESTNLQRGIQTETAIFAKWENHTRGVASKMMANMGYREGMGLGVSGQGMINPIPVKVLPPKQSLDHALESHKDKGEESKDNQGKKRSRGGKRKRDKKFAEAIRVAKEEEEAVSDVFTLINNQLAMHGEAINGGSARKQQGKGSGEGKKVDRRALIAYEDEVNDLRIRVAKLEEMVNRNRREKAVYEAATRKLIETRKALAETEAAHVSASNAVVSKEKEKRWLKF 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral960g00012 496 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Pral960g00012 496 Coils Coil 425 476 - -
Pral960g00012 496 MobiDBLite consensus disorder prediction 242 256 - -
Pral960g00012 496 SMART G-patch_5 292 338 IPR000467 GO:0003676
Pral960g00012 496 MobiDBLite consensus disorder prediction 338 368 - -
Pral960g00012 496 MobiDBLite consensus disorder prediction 242 264 - -
Pral960g00012 496 Gene3D - 120 178 - -
Pral960g00012 496 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Pral960g00012 496 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Pral960g00012 496 MobiDBLite consensus disorder prediction 338 355 - -
Pral960g00012 496 Pfam G-patch domain 294 336 IPR000467 GO:0003676
Pral960g00012 496 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Pral960g00012 496 ProSiteProfiles G-patch domain profile. 294 340 IPR000467 GO:0003676
Pral960g00012 496 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 496 - -
Pral960g00012 496 Coils Coil 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral960g00012 Pral-Chr960 101886 107275 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral960g00012 G-patch 2.2e-12 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral960g00012 - - gmx:100794921 713.375