Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral960g00011 ATGAGGAGGGTTAGAGGAGCCGCCGCTGTTAAACAGATGGCGGCGGTTGAACTTGATGGATCCGGTTCAAGGGCGGTTTTAAAAGAGCCAAGGTACCGGGGCGTGAGGAAGAGACCGTGGGGCAGATTCGCCGCCGAGATCAGAGACCCCTTGAAGAAAGCTCGTGTCTGGTTAGGAACTTTTGACTCCGCCGAGGAAGCGGCTCGAGCTTACGACGCCGCGGCGATAGCCCTCCGTGGACCCAAGGCCAAGACCAATTTTCCTATCTCTCCTTCTTTCTCGCCGTTCTGTTACCCCACCACCAACCCCAACGTCAACGAGGACGTCTTGGATCACCGGTTGTTTGGGAACAGCGCTTTCCAGGAGCACCAGATTAACCCTCAGAGACCAGCCACCAGTAGCATGAGCAGCACATCCTTCAGCGGGCCACGGCCACCGTCCACGACGGCTCCGGCAGCAGTCAACCGTAGATACCCCCGGACGCCGCCGGTCATGCCAGAGGACTGCCACAGCGACTGCGATTCCTCGTCGTCAGTGATCGACGGGGACGGCGGCGGTGAGGTAGCCGATTTCGCCTCGTCGTCGTTCCGCCAACCGTTGCCTTTCGATCTCAACTTCCCACCGTGGGATGCGGCTAACGTGGCGGGTGACGATCTTCACTGTACCGCGCTCTGCCTCTGA 681 0.5991 MRRVRGAAAVKQMAAVELDGSGSRAVLKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDAAAIALRGPKAKTNFPISPSFSPFCYPTTNPNVNEDVLDHRLFGNSAFQEHQINPQRPATSSMSSTSFSGPRPPSTTAPAAVNRRYPRTPPVMPEDCHSDCDSSSSVIDGDGGGEVADFASSSFRQPLPFDLNFPPWDAANVAGDDLHCTALCL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral960g00011 226 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Pral960g00011 226 Pfam AP2 domain 30 80 IPR001471 GO:0003700|GO:0006355
Pral960g00011 226 SUPERFAMILY DNA-binding domain 31 90 IPR016177 GO:0003677
Pral960g00011 226 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Pral960g00011 226 MobiDBLite consensus disorder prediction 126 179 - -
Pral960g00011 226 FunFam Ethylene-responsive transcription factor 2 31 89 - -
Pral960g00011 226 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Pral960g00011 226 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Pral960g00011 226 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 181 - -
Pral960g00011 226 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Pral960g00011 226 MobiDBLite consensus disorder prediction 126 148 - -
Pral960g00011 226 CDD AP2 30 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral960g00011 Pral-Chr960 97800 99202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral960g00011 1 226 AP2-EREBP Transcription Factor Family AT3G20310 57.647 1.03e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral960g00011 AP2 7.5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral960g00011 K09286 - qsa:O6P43_013653 253.447