Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral960g00003 ATGACACTGATGGGCTCTAGAACTACTCGTCGATGGAATTACCATGTTTTCTTGAGTTTTAGAGGAGAGGACACTCGCAGAAACTTTACCGACCACTTGTACGCTGCGTTGCAGCGAAAAGGGATCGTCACTTTCAGGGACGACAAAAAACTCGAGAGGGGACAAGTTATTTCCAACGAACTCATGAAAGCTATTGAGGAATCTCTGTTTGCAATTGTCATTCTCTCCCAGGATTATGCTTCCTCCTCTTGGTGTTTGGATGAACTGCAAAAAATTGTTGAATCCAACCAAAACTTGACAGTTTTCCCAGTTTTTTTTGAAGTAGATCCGTCTGATGTACGCCAACAAAAAGGAATTATTGGGAAAGCTTTTGAGAAACATGAAGGAAAATTTCCAGATTGTAGGGTGACAGGATGGAGAAGAGCTTTAACACAAGTTGCGAACTTCGCTGGTTGGGATACTAGAAACAAGCGTGAAGCAGAAATCGTAGAAAATATTGCTAAAACAATATGGACCAAAGTGCGTGTTAAATTGCCATCTAATTTCGCTCATTTAGTTGGACTTCAACCAAAGGTGGATACATTGATCCCTCTTTTGAAGATAGAGTTGAATCATACATGTTTTATAGGAATATGGGGTATGGGCGGAATAGGCAAGACAACTCTTGCTAGAGTTGTTTATGAGGCAATTCGCAACAAATTTGAAACTAGTTGCTTTCTTGCCAATGTAAGGGAGGAATCAGAGCGTAACGGTTTGGTTTACTTGCAAAAGAAGCTTCTTTCTAGTCTTCTACTAGGAAACATTGAAATCAATGACTCCTATGACGGAGTTGAGGCAATAAGAAACTTCTCATGCAATAAAAAAGTTCTTATTGTTCTCGATGACGTAAGTCATATAAGCCAACTACAGAGTTTAGTTGGAGATAAAGATTGGTTTGGACATGGAAGCAAAATTTTAGTAACTACAAGAGACATACACTTGTTGACAGCACATGATCAGTTTGAGAAGTATGAAATGATGATGCTTGGAAGAGATGAATCTCTCAATCTCTTGTGTAGGCATGCATTTAAAAGGAATTATCCTCAACAGGGTTATTTTGAATTGTCCAAAAAGGTGGTTGATTATGCAGGTGGTCTTCCTTTAGCTCTCCAAGTGTTGGGCTCATTTCTTTGTAAAAGAAGTATACCTGAATGGAGAGACACATTGAATAAGTTAAAGCAAAATTTACATAAAGATATTTTCAAGATACTTAGAATAAGTTATGATGGGCTAGATGATGAAGAGTTCAAAGCAATATTCTTAGACATTGCATGCTTTTTTAATAGGGAGGAAAAAGTTGAAGTGACTAAATATTGGAAAATTGTGGTCTTCATCCAATAA 1380 0.3775 MTLMGSRTTRRWNYHVFLSFRGEDTRRNFTDHLYAALQRKGIVTFRDDKKLERGQVISNELMKAIEESLFAIVILSQDYASSSWCLDELQKIVESNQNLTVFPVFFEVDPSDVRQQKGIIGKAFEKHEGKFPDCRVTGWRRALTQVANFAGWDTRNKREAEIVENIAKTIWTKVRVKLPSNFAHLVGLQPKVDTLIPLLKIELNHTCFIGIWGMGGIGKTTLARVVYEAIRNKFETSCFLANVREESERNGLVYLQKKLLSSLLLGNIEINDSYDGVEAIRNFSCNKKVLIVLDDVSHISQLQSLVGDKDWFGHGSKILVTTRDIHLLTAHDQFEKYEMMMLGRDESLNLLCRHAFKRNYPQQGYFELSKKVVDYAGGLPLALQVLGSFLCKRSIPEWRDTLNKLKQNLHKDIFKILRISYDGLDDEEFKAIFLDIACFFNREEKVEVTKYWKIVVFIQ 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral960g00003 459 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 176 - -
Pral960g00003 459 SMART till_3 13 149 IPR000157 GO:0007165
Pral960g00003 459 FunFam Disease resistance protein (TIR-NBS-LRR class) 343 425 - -
Pral960g00003 459 Gene3D - 175 337 IPR027417 -
Pral960g00003 459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 436 IPR027417 -
Pral960g00003 459 Gene3D - 341 425 IPR042197 -
Pral960g00003 459 PRINTS Disease resistance protein signature 208 223 - -
Pral960g00003 459 PRINTS Disease resistance protein signature 283 297 - -
Pral960g00003 459 PRINTS Disease resistance protein signature 376 390 - -
Pral960g00003 459 Pfam TIR domain 13 183 IPR000157 GO:0007165
Pral960g00003 459 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 152 IPR035897 -
Pral960g00003 459 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 446 IPR044974 GO:0006952
Pral960g00003 459 Gene3D - 10 174 IPR035897 -
Pral960g00003 459 ProSiteProfiles TIR domain profile. 12 178 IPR000157 GO:0007165
Pral960g00003 459 Pfam NB-ARC domain 204 421 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral960g00003 Pral-Chr960 26506 32584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral960g00003 7 449 WRKY Transcription Factor Family AT4G12020 27.617 2.54e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral960g00003 - - pcin:129318799 724.931