Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral959g00012 ATGGGGAAGAAGAAAGTGAAGGAAAGTGGAGGGAAAGAGCACTGCCCCTCTACTGTTTTTGTCTCGAACTTGCCCTACTCATTCACCAATTCTCAGTTGGAGGAGACGTTTAGCGAAGTTGGACCAATCAGGCGTTGCTTCATGGTCATGCAGAAGGGGTCATCTCAGCATCGTGGTTTTGGTTATGTTCAATTCGCTGTCGAGGAAGATGCTAACCGTGCAATTGAGTCGAAGAATGGTTCATCTGTTGGAGGCCGGAAAATTGCAGTAAAGCATGCCATGCCTCGTCCTCCCCGTGAAGCACGACAATCAAAGTCAAACCAAGAGAATGCTGATGATATCCCAAAGTCAAAAAATGATGACAATGATGGTGGCTTTTCTGGAGTGAAGAAGCCTTCGTCAGTTACTAAGGAAAAAGTTGTAAATAATGAAAACCATTCAAGGAAGCATAGTGAAGTGAAAAAAGCAGTTCTTTGTAGGGATATAGCAGATGAGGGGGGCTGTTCTGAAAAGCAGAGGGTTGCTAGAACTGTCATATTTGGCGGTCTTATCAATTCGGATATGGCTGAAGTTGTTCACAGCCAAGTACGGGAGATTGGCAGTGTGTGTTCTATAAAGTACCCCCTTCCTAGGGAAGAATTTGAACAGCATGGTCTCTTGCAAGATGGATGTAAATTGGATGCTTCAGCTGTACTTTACACAAGTGTGAAATCAGCACGAGCTTCTGTTGCGTTGCTGCATCAGAAAGAAATTGGAGGAGGAATTGTCTGGGCACGTCAATTGGGTGGAGAGGGTTCCAAGACACAGAAATGGAAGCTTATTGTTAGAAATCTTCCGTTCAAGGCCAAGGAAAATGAAGTAAAAGAAATGTTTTCATCTGCTGGGTTCGTGTGGGATGTATTTATTCCACGCAAGTCTGATACAGGACTGTCTAAGGGTTTTGCATTTGTGAAATTCACTTGCAAGCAACATGCAGAAAATGCTATTCAGAAGCTTAATGGATCAAAGCTTGGCAAGCGCCTCATAGCTGTTGATTGGGCTGTTCCAAAGAAGATATATAGCAATGATAAAAATGGTATGCTTGCTTTGGAAAATGGTAGGTTTTGA 1107 0.4327 MGKKKVKESGGKEHCPSTVFVSNLPYSFTNSQLEETFSEVGPIRRCFMVMQKGSSQHRGFGYVQFAVEEDANRAIESKNGSSVGGRKIAVKHAMPRPPREARQSKSNQENADDIPKSKNDDNDGGFSGVKKPSSVTKEKVVNNENHSRKHSEVKKAVLCRDIADEGGCSEKQRVARTVIFGGLINSDMAEVVHSQVREIGSVCSIKYPLPREEFEQHGLLQDGCKLDASAVLYTSVKSARASVALLHQKEIGGGIVWARQLGGEGSKTQKWKLIVRNLPFKAKENEVKEMFSSAGFVWDVFIPRKSDTGLSKGFAFVKFTCKQHAENAIQKLNGSKLGKRLIAVDWAVPKKIYSNDKNGMLALENGRF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral959g00012 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Pral959g00012 368 MobiDBLite consensus disorder prediction 76 153 - -
Pral959g00012 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 349 IPR000504 GO:0003723
Pral959g00012 368 PANTHER RNA-BINDING MOTIF PROTEIN 14B 14 359 - -
Pral959g00012 368 SMART rrm1_1 272 345 IPR000504 GO:0003723
Pral959g00012 368 SMART rrm1_1 18 91 IPR000504 GO:0003723
Pral959g00012 368 CDD RRM1_RBM28_like 18 96 - -
Pral959g00012 368 CDD RRM2_RBM28_like 272 348 - -
Pral959g00012 368 MobiDBLite consensus disorder prediction 93 125 - -
Pral959g00012 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 88 IPR000504 GO:0003723
Pral959g00012 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 342 IPR000504 GO:0003723
Pral959g00012 368 FunFam - 2 129 - -
Pral959g00012 368 SUPERFAMILY RNA-binding domain, RBD 266 354 IPR035979 GO:0003676
Pral959g00012 368 SUPERFAMILY RNA-binding domain, RBD 17 257 IPR035979 GO:0003676
Pral959g00012 368 Gene3D - 258 362 IPR012677 -
Pral959g00012 368 Gene3D - 2 131 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral959g00012 Pral-Chr959 16970 21686 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral959g00012 17 97 Eukaryotic Initiation Factors Gene Family AT3G11400 34.568 1.45e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral959g00012 K14573 - gmx:100794821 573.163