Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral959g00011 ATGGGGAAGAAGAAAGTGAAGGAAAGTGGAGGGAAAGAGCACTGCCCCTCTACTGTTTTTGTCTCGAACTTGCCCTACTCATTCACCAATTCTCAGTTGGAGGAGACGTTTAGCGAAGTTGGACCAATCAGGCGTTGCTTCATGGTCATGCAGAAGGGGTCATCTCAGCATCGTGGTTTTGGTTATGTTCAATTCGCTGTCGAGGAAGATGCTAACCGTGCAATTGAGTCGAAGAATGGTTCATCTGTTGGAGGCCGGAAAATTGCAGTAAAGCATGCCATGCCTCGTCCTCCCCGTGAAGCACGACAATCAAAGTCAAACCAAGCAGAGAATGCTGATGATATCCCAAAGTCAAAAAATGATGACAATGATGGTGGCTTTTCTGGAGTGAAGAAGCCTTCGTCAGTTACTAAGGAAAAAGTTGTAAATAATGAAAACCATTCAAGGAAGCATAGTGAAGTGAAAAAAGCAGTTCTTTGTAGGGATATAGCAGATGAGGGGGGCTGTTCTGAAAAGCAGAGGGTTGCTAGAACTGTCATATTTGGCGGTCTTATCAATTCGGATATGGCTGAAGTTGTTCACAGCCAAGTACGGGAGATTGGCAGTGTGTGTTCTATAAAGTACCCCCTTCCTAGGGAAGAATTTGAACAGCATGGTCTCTTGCAAGATGGATGTAAATTGGATGCTTCAGCTGTACTTTACACAAGTGTGAAATCAGCACGAGCTTCTGTTGCGTTGCTGCATCAGAAAGAAATTGGAGGAGGAATTGTCTGGGCACGTCAATTGGGTGGAGAGGGTTCCAAGACACAGAAATGGAAGCTTATTGTTAGAAATCTTCCGTTCAAGGCCAAGGAAAATGAAGTAAAAGAAATGTTTTCATCTGCTGGGTTCGTGTGGGATGTATTTATTCCACGCAAGTCTGATACAGGACTGTCTAAGGGTTTTGCATTTGTGAAATTCACTTGCAAGCAACATGCAGAAAATGCTATTCAGAAGCTTAATGGATCAAAGCTTGGCAAGCGCCTCATAGCTGTTGATTGGGCTGTTCCAAAGAAGATATATAGCAATGATAAAAATGGTATGCTTGCTTTGGAAAATGGTAGGTTTTGA 1110 0.4333 MGKKKVKESGGKEHCPSTVFVSNLPYSFTNSQLEETFSEVGPIRRCFMVMQKGSSQHRGFGYVQFAVEEDANRAIESKNGSSVGGRKIAVKHAMPRPPREARQSKSNQAENADDIPKSKNDDNDGGFSGVKKPSSVTKEKVVNNENHSRKHSEVKKAVLCRDIADEGGCSEKQRVARTVIFGGLINSDMAEVVHSQVREIGSVCSIKYPLPREEFEQHGLLQDGCKLDASAVLYTSVKSARASVALLHQKEIGGGIVWARQLGGEGSKTQKWKLIVRNLPFKAKENEVKEMFSSAGFVWDVFIPRKSDTGLSKGFAFVKFTCKQHAENAIQKLNGSKLGKRLIAVDWAVPKKIYSNDKNGMLALENGRF 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral959g00011 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Pral959g00011 369 SMART rrm1_1 273 346 IPR000504 GO:0003723
Pral959g00011 369 SMART rrm1_1 18 91 IPR000504 GO:0003723
Pral959g00011 369 FunFam - 2 130 - -
Pral959g00011 369 SUPERFAMILY RNA-binding domain, RBD 267 355 IPR035979 GO:0003676
Pral959g00011 369 PANTHER RNA-BINDING MOTIF PROTEIN 14B 14 360 - -
Pral959g00011 369 CDD RRM1_RBM28_like 18 96 - -
Pral959g00011 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 88 IPR000504 GO:0003723
Pral959g00011 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 343 IPR000504 GO:0003723
Pral959g00011 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 350 IPR000504 GO:0003723
Pral959g00011 369 CDD RRM2_RBM28_like 273 349 - -
Pral959g00011 369 Gene3D - 2 108 IPR012677 -
Pral959g00011 369 Gene3D - 259 363 IPR012677 -
Pral959g00011 369 MobiDBLite consensus disorder prediction 112 126 - -
Pral959g00011 369 MobiDBLite consensus disorder prediction 76 154 - -
Pral959g00011 369 SUPERFAMILY RNA-binding domain, RBD 17 258 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral959g00011 Pral-Chr959 16970 21686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral959g00011 17 97 Eukaryotic Initiation Factors Gene Family AT3G11400 34.568 1.43e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral959g00011 K14573 - gmx:100794821 578.941