Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral959g00006 ATGGCAACTTATTTGCCAAATTCATATTCTGAGACACCGATTACCCCTAGTAATGTAACGTTGTATATGAACAATGGTTCATATCCAGAAGCATTCTCTGGCAATTCTCAGGAGCAAAATGGGTGCTTTGTGATCCCACCAACGAGTTTGTCACAATCAGCCCCAGAACAGCAAGAAATCTTGGCAAATCTTGGTGGGCAACAAACTGGGGCCTATGATTTCACTGCATGGAGACCGGGGAGAAATGAGATGCTAGTAACACACCCCATGGATGGACATAACTTGCAGAGCCAGGGATTATCTCTCAGTCTTGGGTCCCAAACACCACCAGGAATCCAAGTGTCCCCTTTCCATGATCAAAGTTCTAACCCAAGTTTTGATTCGTTTTTAGGTCAAAATCCATCAATTTCAGGCCATAAAAACAGCTCATCTAGACATGAGTGTATGAGGCACGGTGAAATTTTGCCTCCTGATTTACCTGAAGCTAGTCAAGTTTTGGATAGAGGGGATTATTCTTTGCACGGAATGCCAAATATTTCAAGAACAATTCCTAATTCCAAGTACCTCAAGGCAGCACAGGAGCTACTCGATGAGGTTGTTGACATCCAAAAAGCTATAAAACAACCCAATGGGAAAAGTCCTAGCGCAGGTGAGAAAAAGACTTCTAAGGAGAATGATGGGAGACTAGAAAATGAAAGGGCCCCTGCTAATAGAGAGCCTAACCCTCAAGATTTAGCCGGCAACACCTCTTGTGAGCTTTTACATGCTGAAAAACAAGATCTGCAGAACAAGTTAACAAAGCTACTGTCAATGCTGGATGAGGTTCACAGCAGGTACAAACAATATTATCATCAGATGCAGATTGTGGTATTGTCATTTGATGTGATAGCAGGACGTGGGGCAGCTAAACCATACACGGCACTGGCTCTCCAAACCATTTCGCGTCATTTCCGGTGCTTGCATGATGCAATCACTGGCCAGATCAGTGCGACACAGAAGAGCCTTGGAGAGCAAGATTCTGCAGGAAATAATGAAGGAGTTGGAATATCAAGACTCCGGTATGTTGACCAACAAATCCGGCAACAGAGGGCTCTCCAGCAGCTTGGAGTGATGCATCATGCGTGGAGGCCACAAAGGGGACTACCAGAAGGCTCTGTTTCAATTCTTCGCGCCTGGCTTTTTGAACATTTCCTTCATCCCTATCCCAAAGATTCTGAAAAGGCAATGCTAGCAAGGCAGACAGGTTTGACTAGAAGTCAGGTCTCAAATTGGTTTATAAATGCACGAGTTCGTCTCTGGAAACCTATGATTGAGGAGATGTACAAGGAAGAAATTGGAGATGCCGACTTGAACTCCAGTTCTTCAACTGAAGAGGCATCCAAGGTAGGCAAAAGCGATGTCAAGATCTCCGAAGATGGGTGCGATGATTTACAACAGAGCCAGCGTTCAATAGCCGACAAGAACAGCAATGTTGGACTTGGACAAACAAAAGACTTGGGATCTGACAAGCAGACCGAGGAGCATCAAAGGCTCAGCTTCGATGACTGTAGTGTCTTCCAAGATAACACAGATGTTCAGACTAATGAAGGCAATGCAGGGTTTGTGGCGGTTGCTCCGGCGTGCCAAATGTCCGAGTTGGGAAGGTTTCAGTCTGGGAACGGCGTGTCCCTGACATTAGGCTTGCAGCACTGTGAAGTTGGTGACTTTATGTCTGGTGAGAGTCGTCATAGCTTCGTTGTCATGAGGGAGGATGGTACCATTGGAGCTCAGACATCAGAACTTGATTACGTAGCTGCTGGAAACCAGCACCGAAGGTTCACTGCGTCCCGTTAA 1833 0.4577 MATYLPNSYSETPITPSNVTLYMNNGSYPEAFSGNSQEQNGCFVIPPTSLSQSAPEQQEILANLGGQQTGAYDFTAWRPGRNEMLVTHPMDGHNLQSQGLSLSLGSQTPPGIQVSPFHDQSSNPSFDSFLGQNPSISGHKNSSSRHECMRHGEILPPDLPEASQVLDRGDYSLHGMPNISRTIPNSKYLKAAQELLDEVVDIQKAIKQPNGKSPSAGEKKTSKENDGRLENERAPANREPNPQDLAGNTSCELLHAEKQDLQNKLTKLLSMLDEVHSRYKQYYHQMQIVVLSFDVIAGRGAAKPYTALALQTISRHFRCLHDAITGQISATQKSLGEQDSAGNNEGVGISRLRYVDQQIRQQRALQQLGVMHHAWRPQRGLPEGSVSILRAWLFEHFLHPYPKDSEKAMLARQTGLTRSQVSNWFINARVRLWKPMIEEMYKEEIGDADLNSSSSTEEASKVGKSDVKISEDGCDDLQQSQRSIADKNSNVGLGQTKDLGSDKQTEEHQRLSFDDCSVFQDNTDVQTNEGNAGFVAVAPACQMSELGRFQSGNGVSLTLGLQHCEVGDFMSGESRHSFVVMREDGTIGAQTSELDYVAAGNQHRRFTASR 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral959g00006 610 ProSiteProfiles 'Homeobox' domain profile. 372 435 IPR001356 GO:0003677
Pral959g00006 610 Pfam Homeobox KN domain 392 431 IPR008422 GO:0003677|GO:0006355
Pral959g00006 610 SMART HOX_1 375 439 IPR001356 GO:0003677
Pral959g00006 610 Gene3D - 371 449 - -
Pral959g00006 610 CDD homeodomain 375 436 IPR001356 GO:0003677
Pral959g00006 610 SUPERFAMILY Homeodomain-like 377 442 IPR009057 -
Pral959g00006 610 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 103 455 - -
Pral959g00006 610 SMART prehox3 177 326 IPR006563 -
Pral959g00006 610 MobiDBLite consensus disorder prediction 483 499 - -
Pral959g00006 610 MobiDBLite consensus disorder prediction 448 471 - -
Pral959g00006 610 Coils Coil 251 278 - -
Pral959g00006 610 MobiDBLite consensus disorder prediction 483 507 - -
Pral959g00006 610 Pfam Associated with HOX 183 325 IPR006563 -
Pral959g00006 610 MobiDBLite consensus disorder prediction 206 246 - -
Pral959g00006 610 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral959g00006 Pral-Chr959 7475 12573 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral959g00006 8 610 Homeobox Transcription Factor Family AT4G34610 42.097 1.40e-125 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pral959g00006 POX 3e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral959g00006 - - gmx:100801522 721.85