Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral959g00004 ATGGAGTCACCCGCAGTTGGTGTGCTGCCGGCTAAACGCCCTGCAAATGGATTTAATTTAGAGAAACACAAAAGATTAAAAGTTGTAGACTATAGCAATCCATATGCAATTGCCGACTTGCTTGATGGCCTGAACCACGGAAAATTTGGAAGTGTCACAAAGGATATAGAGTCCCTTATAGCTCAAAAGATGCAGACATTGAGCCCTATATTTGCAAAAGATCCTGCGCTTCTACAGTTTGTGAAAGTGGGAATGAATCACAATGAAGACACTGCAAAGAAAATCATAGATTTGGAGGATAATCTCAAGACAAAGACTGCTCCAAAAGCATCATCAACTGTTGTAATTATTGATTCAGATGAGGAAGATGATAGAGATAAGAAACCTTTTCTGCCATTTCAAGAAGTTGTACTGCCAAAACCTGTTGTCCCACCGACTACAAAGGACATGGTTGTGTACCATGGTCCCAATGCACATCCTTCTATTGGGTGTCATGCTGGAATTCTAGGTGTAAAACCTGAACTTTCTCTTGTTGGTGAAGACAACATTGAAAAAGATAAAGGTGCTTTTATTGGTGTTCAAGGGGAAGACAATCCACAGGCTGATACAAAGGGCGATGAGCTAGATGATATTTGGAGGGAGATGTCAATGGCAATAGAATGTTCCAAAGATGATGCTATGGATTCTCCACATGATGAAGCTGAAAAGGGTGGGGGTGACTGTGATCACTCTTATGTTTTAAAAGATGATCTTGGTTATGTTTGTCGCGTCTGTGGAGTTATCGACAGAGGAATTGAAACCATATTTGAATTCCAGTACAAGGTCAAAAAAAGTACAAGAACTTACGCGGCTGATTCATGGAATGCCAAAGAGAGAACAGCGCCTGAGGTATCAGGACTTAAATTTGGTGAAGATGGTCTTGTGATAACTGAAATATCTGCTCACCCTAGGCATATGAAGCAAATGAAACCTCATCAAATTGAAGGATTTAATTTTCTTGTCCGTAACCTTGCGGGTGACAATCCTGGTGGTTGCATCTTGGCCCATGCTCCTGGTTCTGGGAAGACATTCATGATAATTAGTTTCATGCAAAGTTTTCTGGGCAAGTATCCTCAGGCTCATCCCCTTGTGGTTCTTCCTAAGGGAATATTGGCTACTTGGAAAAAGGAGTTCCAAACATGGCAAGTGGAGGACATTCCACTCTATGATTTTTACTCTGCTAAGGCAGACAGTCGGTCTCAGCAACTGGAAGTTTTAAAACAGTGGGTGGAGCAGAAGAGTATTCTTTTCCTAGGATACAAACAATTCTCTTCAATTGTCTGTGATACTGGAACTAGCCCCGTATCAGTAACTTGCCAAAAGATATTGCTTGAGGCTCCTTCTATTCTAATTTTAGATGAGGGACACACACCAAGGAATGACAACACTGACATAGTTCAATCCCTTACGAAAGTGCAAACTCCTCGAAAAGTTGTGCTGTCAGGAACCCTATATCAAAATCATGTCAAGGAGGTGTTTAACATTTTAAACATTGTGCGTCCACCAAATTTTCTACGTTCACAGACATCTCGACCTATTGTCAGGCGCATTAAGAGTAGAGTGCATGTACCAGGCGTGAAAGATTTCTGTGACTTGGTGGAGAACACTTTGCAGAAGGACCCTGATTTTAAAAGGAAAGTGGCTGTCATTCAAGATTTGCGTGAGATGACAAGCCAGGTACTTCATTACTACAAGGGAGATTTTCTTGATGAGCTTCCTGGCCTTGTAGATTTTGCTGTTGTGCTCAATCTTACTCCCCGACAGAAGCATGAAGTCCATAAACTAAAGCACTTATCCAGAAAGTTTAAGATAAGTTCTGTAGGAAGTGCTGTTTATCTCCACGCTAAATTAAAGCCTATGGCGGAAAATTGCGCTGAGAATTCTGCTGTATCTGATCAGATGATGGATGAGAAAATAGAGAGTATAGATGTGGAAGATGGAGTAAAGTCAAAATTCTTTCTTAAAATGCTGAACCTTTGTGAATCAAGTGGGGAGAAGCTTCTAGTTTTCAGCCAATATCTCTTGCCTTTGAAATATTTAGAAAGGTTAACTGTGAAAAGGAAGGGATGGAGTCCAGGAAAAGAAATATTTGTTATATCAGGTGAATCAAGCTCTGAACAAAGAGAATGGTCCATGGAGCGGTTTAACAATTCACCAGATGCTAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAAGGCATATCTCTGGTTGGGGCATCGCGCATAATTATTTTAGATGTTCATCTAAATCCATCAGTGACACGCCAAGCAATTGGCCGTGCATTCCGACCAGGTCAGACAAAGAAAGTCTTTGCATATCGGTTGATAGCTGCCGATTCTCCTGAACAAGAAGACCATGATACTTGTTTCAAGAAGGAATTAATATCAAAAATGTGGTTTGAATGGAATGAATACTGCGGCTTTCGTGATTTTGAAGTTGAGACTGTTAATGTGGAACAATGTGATGATTTCTTTCTGCAAAGTCCGTTGCTAAGGGATGATATTAAAATTCTGCATAGAAGGCCTTGA 2571 0.4076 MESPAVGVLPAKRPANGFNLEKHKRLKVVDYSNPYAIADLLDGLNHGKFGSVTKDIESLIAQKMQTLSPIFAKDPALLQFVKVGMNHNEDTAKKIIDLEDNLKTKTAPKASSTVVIIDSDEEDDRDKKPFLPFQEVVLPKPVVPPTTKDMVVYHGPNAHPSIGCHAGILGVKPELSLVGEDNIEKDKGAFIGVQGEDNPQADTKGDELDDIWREMSMAIECSKDDAMDSPHDEAEKGGGDCDHSYVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKKSTRTYAADSWNAKERTAPEVSGLKFGEDGLVITEISAHPRHMKQMKPHQIEGFNFLVRNLAGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPQAHPLVVLPKGILATWKKEFQTWQVEDIPLYDFYSAKADSRSQQLEVLKQWVEQKSILFLGYKQFSSIVCDTGTSPVSVTCQKILLEAPSILILDEGHTPRNDNTDIVQSLTKVQTPRKVVLSGTLYQNHVKEVFNILNIVRPPNFLRSQTSRPIVRRIKSRVHVPGVKDFCDLVENTLQKDPDFKRKVAVIQDLREMTSQVLHYYKGDFLDELPGLVDFAVVLNLTPRQKHEVHKLKHLSRKFKISSVGSAVYLHAKLKPMAENCAENSAVSDQMMDEKIESIDVEDGVKSKFFLKMLNLCESSGEKLLVFSQYLLPLKYLERLTVKRKGWSPGKEIFVISGESSSEQREWSMERFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFAYRLIAADSPEQEDHDTCFKKELISKMWFEWNEYCGFRDFEVETVNVEQCDDFFLQSPLLRDDIKILHRRP 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral959g00004 856 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 336 515 IPR014001 -
Pral959g00004 856 CDD SF2_C_SNF 650 790 - -
Pral959g00004 856 Pfam SNF2-related domain 342 607 IPR000330 GO:0005524|GO:0140658
Pral959g00004 856 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 198 853 IPR044567 GO:0080188
Pral959g00004 856 Pfam Helicase conserved C-terminal domain 669 778 IPR001650 -
Pral959g00004 856 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 817 IPR027417 -
Pral959g00004 856 SMART helicmild6 691 779 IPR001650 -
Pral959g00004 856 Gene3D - 295 536 IPR038718 -
Pral959g00004 856 SMART ultradead3 318 522 IPR014001 -
Pral959g00004 856 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 665 833 IPR001650 -
Pral959g00004 856 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 310 517 IPR027417 -
Pral959g00004 856 Gene3D - 586 839 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral959g00004 Pral-Chr959 213 5726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral959g00004 676 797 RAD5 or RAD16-like Gene Family AT5G43530 36.066 1.94e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral959g00004 SNF2_N 3.8e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral959g00004 K10875 - gmx:100780454 1211.44