Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral957g00003 ATGTCAGAGTATGGCAGAGCCGGAGAGTTGTCGGCAATGGTTTCGGCGCTTACGCATGTGGTGTCATCAGGTTCATCTGGACACAGAGACACTAATGAATGGCTCCAAGGAATAAGTGGTTTTCCTATGATGTCACCTTTTGGTCATGTTTCATCTCCTCGTCTGTCTCCTTCTTCATCTTCCTCAGGTCCTCTTATGGGCTCTGCCTCTGGTTCATGGCTAGGTCAGAAAAGAGGCCGTCAGGAAGAAGAAGAAGCCGCATTCAAAGCCGCCATTGGTGACTTCGCTGCATCATCACAGAACGAGTCTGCATCAACAGTGACGGAGGTGGAAGCTTCGAATATCACTGCAACTGACGCACCGGTGGTGGCTACTTCGGCCTTACCGGTGATGCCGTCGAGTGAAACTGTTTCCTATGAAGAAACAGGGGAGAGGAGGAGGAGGTACAGAGGGGTGAGGCAGAGGCCTTGGGGTAAGTGGGCAGCGGAGATTCGCGACCCCCACAAGGCGGCAAGGGTCTGGCTTGGCACGTTCGACACGGCGGAGGCGGCCGCGAGAGCTTATGACGAAGCCGCATTGAGGTTCAGGGGTAGCAGAGCCAAACTGAACTTTCCGGAAAACGTCAGAGCAGTTCCGGTGCCCGTTCAAAATTTTCCTGCCACCACCCACGTCCTTCAGCAGTCCCCGGCGGCGCTTCCGTTCATGCAGGCGTCGTCTTTTCAGGGGCCCTCTGATTTGGTCAGAGACTATTGGAATTACTCCCAGATGCTCCAGAGTTCCGGCGACTTCCAAGGTCAACGGCAACCACAGCCGCCGCAGCAGATACCGCCGGGTTTGGTGCAGCAATGGCTCTACAATTCTCAATTGAGTGCTCTTCAATCGTCTTCTTCGTTGTTTTCACCATCATCATTGTCGTCATCTTCATCTCCCACTACATTTTCACCTTCTAGTCAGTTATCCCCTGCTTCATTTCCCCTAACTTCCGGTCAGCAAATAGGCTATTTCCGACCACCGGGAAACCAGACTCAGGGCGGAGACACCTCGTATTTTCCTACGTCAACATGGTCAGACACCGGCAACTATCCTCCGCCGTCCAGGTGA 1101 0.5368 MSEYGRAGELSAMVSALTHVVSSGSSGHRDTNEWLQGISGFPMMSPFGHVSSPRLSPSSSSSGPLMGSASGSWLGQKRGRQEEEEAAFKAAIGDFAASSQNESASTVTEVEASNITATDAPVVATSALPVMPSSETVSYEETGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGSRAKLNFPENVRAVPVPVQNFPATTHVLQQSPAALPFMQASSFQGPSDLVRDYWNYSQMLQSSGDFQGQRQPQPPQQIPPGLVQQWLYNSQLSALQSSSSLFSPSSLSSSSSPTTFSPSSQLSPASFPLTSGQQIGYFRPPGNQTQGGDTSYFPTSTWSDTGNYPPPSR 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral957g00003 366 SMART rav1_2 148 211 IPR001471 GO:0003700|GO:0006355
Pral957g00003 366 SUPERFAMILY DNA-binding domain 148 206 IPR016177 GO:0003677
Pral957g00003 366 CDD AP2 156 207 IPR001471 GO:0003700|GO:0006355
Pral957g00003 366 PRINTS Ethylene responsive element binding protein signature 171 187 IPR001471 GO:0003700|GO:0006355
Pral957g00003 366 PRINTS Ethylene responsive element binding protein signature 149 160 IPR001471 GO:0003700|GO:0006355
Pral957g00003 366 MobiDBLite consensus disorder prediction 300 366 - -
Pral957g00003 366 FunFam Ethylene-responsive transcription factor 2 147 206 - -
Pral957g00003 366 MobiDBLite consensus disorder prediction 51 69 - -
Pral957g00003 366 ProSiteProfiles AP2/ERF domain profile. 148 205 IPR001471 GO:0003700|GO:0006355
Pral957g00003 366 PANTHER DNA-BINDING DOMAIN 105 294 IPR044808 GO:0003700|GO:0009873
Pral957g00003 366 Gene3D AP2/ERF domain 147 207 IPR036955 GO:0003700|GO:0006355
Pral957g00003 366 Pfam AP2 domain 148 197 IPR001471 GO:0003700|GO:0006355
Pral957g00003 366 MobiDBLite consensus disorder prediction 48 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral957g00003 Pral-Chr957 19546 21691 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral957g00003 103 223 AP2-EREBP Transcription Factor Family AT2G33710 55.372 2.09e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral957g00003 AP2 7.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral957g00003 - - pcin:129292679 500.745