Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral957g00002 ATGTCAGAGTATGGCAGAGCCGGAGAGTTGTCGGCAATGGTTTCGGCGCTTACGCATGTGGTGTCATCAGGTTCATCTGGACACAGAGACACTAATGAATGGCTCCAAGGAATAAGTGGTTTTCCTATGATGTCACCTTTTGGTCATGTTTCATCTCCTCGTCTGTCTCCTTCTTCATCTTCCTCAGGTCCTCTTATGGGCTCTGCCTCTGGTTCATGGCTAGGTCAGAAAAGAGGCCGTCAGGAAGAAGAAGAAGCCGCATTCAAAGCCGCCATTGGTGACTTCGCTGCATCATCACAGAACGAGTCTGCATCAACAGCAGTGACGGAGGTGGAAGCTTCGAATATCACTGCAACTGACGCACCGGTGGTGGCTACTTCGGCCTTACCGGTGATGCCGTCGAGTGAAACTGTTTCCTATGAAGAAACAGGGGAGAGGAGGAGGAGGTACAGAGGGGTGAGGCAGAGGCCTTGGGGTAAGTGGGCAGCGGAGATTCGCGACCCCCACAAGGCGGCAAGGGTCTGGCTTGGCACGTTCGACACGGCGGAGGCGGCCGCGAGAGCTTATGACGAAGCCGCATTGAGGTTCAGGGGTAGCAGAGCCAAACTGAACTTTCCGGAAAACGTCAGAGCAGTTCCGGTGCCCGTTCAAAATTTTCCTGCCACCACCCACGTCCTTCAGCAGTCCCCGGCGGCGCTTCCGTTCATGCAGGCGTCGTCTTTTCAGGGGCCCTCTGATTTGGTCAGAGACTATTGGAATTACTCCCAGATGCTCCAGAGTTCCGGCGACTTCCAAGGTCAACGGCAACCACAGCCGCCGCAGCAGATACCGCCGGGTTTGGTGCAGCAATGGCTCTACAATTCTCAATTGAGTGCTCTTCAATCGTCTTCTTCGTTGTTTTCACCATCATCATTGTCGTCATCTTCATCTCCCACTACATTTTCACCTTCTAGTCAGTTATCCCCTGCTTCATTTCCCCTAACTTCCGGTCAGCAAATAGGCTATTTCCGACCACCGGGAAACCAGACTCAGGGCGGAGACACCTCGTATTTTCCTACGTCAACATGGTCAGACACCGGCAACTATCCTCCGCCGTCCAGGTGA 1104 0.5371 MSEYGRAGELSAMVSALTHVVSSGSSGHRDTNEWLQGISGFPMMSPFGHVSSPRLSPSSSSSGPLMGSASGSWLGQKRGRQEEEEAAFKAAIGDFAASSQNESASTAVTEVEASNITATDAPVVATSALPVMPSSETVSYEETGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGSRAKLNFPENVRAVPVPVQNFPATTHVLQQSPAALPFMQASSFQGPSDLVRDYWNYSQMLQSSGDFQGQRQPQPPQQIPPGLVQQWLYNSQLSALQSSSSLFSPSSLSSSSSPTTFSPSSQLSPASFPLTSGQQIGYFRPPGNQTQGGDTSYFPTSTWSDTGNYPPPSR 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral957g00002 367 SMART rav1_2 149 212 IPR001471 GO:0003700|GO:0006355
Pral957g00002 367 PRINTS Ethylene responsive element binding protein signature 172 188 IPR001471 GO:0003700|GO:0006355
Pral957g00002 367 PRINTS Ethylene responsive element binding protein signature 150 161 IPR001471 GO:0003700|GO:0006355
Pral957g00002 367 PANTHER DNA-BINDING DOMAIN 106 295 IPR044808 GO:0003700|GO:0009873
Pral957g00002 367 ProSiteProfiles AP2/ERF domain profile. 149 206 IPR001471 GO:0003700|GO:0006355
Pral957g00002 367 SUPERFAMILY DNA-binding domain 149 207 IPR016177 GO:0003677
Pral957g00002 367 MobiDBLite consensus disorder prediction 51 69 - -
Pral957g00002 367 CDD AP2 157 208 IPR001471 GO:0003700|GO:0006355
Pral957g00002 367 Gene3D AP2/ERF domain 148 208 IPR036955 GO:0003700|GO:0006355
Pral957g00002 367 MobiDBLite consensus disorder prediction 301 367 - -
Pral957g00002 367 Pfam AP2 domain 149 198 IPR001471 GO:0003700|GO:0006355
Pral957g00002 367 MobiDBLite consensus disorder prediction 48 84 - -
Pral957g00002 367 FunFam Ethylene-responsive transcription factor 2 148 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral957g00002 Pral-Chr957 19544 21691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral957g00002 134 224 AP2-EREBP Transcription Factor Family AT2G33710 67.033 8.19e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral957g00002 AP2 7.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral957g00002 - - pcin:129292679 503.056