Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral954g00004 ATGGAGGAAGACGAAGACAGAATCTTACTCAATAGTTTGGGCCTAGAGTCTGCCAATCACGAATGCATCGAAAAAGACGTATTAGCTGAGGCACAGAATGACGTGGTGACCATTACTGAAGCTGATGGAAATTCAAAGGAAGAGTCTCCTCAGAAATATGAAAATGTTGATCCATCATCTATTGGCAAAGCGCAACTTTATCATAAGTTGAGAGCAGTAGATTTTGAAATAAATGCAGTTGCTTCCACTATCCAACAAGTGAGAAATGCTGAAAGTGATGGAGTTTGTATTGATGGTGGTGCTGACAATCGGGAGGAAGGGACTACCAAGGATATTTCCTCCAACGGTTTGAATCTTCAACATGTTCTTGCTTCTGATAGGTTAGAAAGCCTAAAGAAGACAAAGGCTCAACTAGAAAAAGAGCTTTTAGATTTGTGCAAAGAGAAACCTTGCAGAAGTATTGATGGGGACAAAGATAATGAGATCTTTAATTTGGTTAAGGAAGAGCGAAGATCCAAGAGGAAGCCTAAAGAAGTTAAAAGTTTACCAAAAGGCTCAGGGAAACAGCGTAAAACAGTTTCATTTAATGACGATGTTGATTTTGATGCAGTTTTAGATGCTACCTCAGCAGGCTTTGTTGAGACGGAAAGGGACCATTTGGTAAGGAAAGGGATTTTGACCCCATTTTCTAACCTGAAGGGCTTTGAACGCCGCTTTCAACAATCAGAAACATCTAGTAGTTATGGTGTGAGTCAAGAAGAAACGACTGATGATCTTGCTTCTTCTAGTATTGAAAGAGCTGCCCAATCAATATCTGAGGCAGCAAGAGCTCGCCCAACCACCAAGTTGCTTGAGTCTGAAGATCTGCCAAAACTTGATGCACCCACTCATCCTTTTGTCAGACTCAAAGTACCACTAAAACTTCCTCAGTCCCAAGAAAGAGAGCTAGAGAAGAAAAATAATTTGAAAAGGAAAAAGAGGCGACCTTTGCCTGGTAGGAAATGGACAAAGCGTGTTTCTTGTGAGGAAATACAGTCAAGAGAGACTGATGAATCAAGTGGTTGCCTGGACCCTTCCAGTTGTGAAAATTTAGATGCACAGGATTTTGAATCTGACGATCACGAACCTTCTTTTATAACATTAGAAGGCGGACTGAAAATCCCTGATAATATTTTCGATGCACTATTTGACTATCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATCATTGGTGATGAGATGGGTCTCGGTAAAACCATCCAGGTTTTATCTTTTCTTGGTGCATTGCATTTTAGTGGCATGTATAAACCAAGCATTATCATTTGTCCTGTGACCCTGTTGCGACAGTGGAAAAGGGAAGTTCAAAAATGGTACCCAAAATTTCATGTAGAGCTTTTACATGATTCTGTGCGAGAACCTGATGTTAGAAAGAAGCAGTCCAAGTGTGATGAATCGGACTATGATAGTAATAGTTCAAGTGACAGTGATTATGAGACCAATATTCAATCAAAAAGCACAAGAAAATGGGAATCCCTGATAACTCGTGTAATGAGAACAGAATCTGGATTGCTTATCACAACATATGAGCAGCTCAGAATATTGAGGGACCTGTTACTCGACATTGAATGGGGTTATGCAATTCTTGATGAAGGACACAGAATAAGGAATCCAAATGCTGAAATTACGCTGGTTTGCAAACAGCTGCAGACTATACACCGTATCATAATGACTGGCTCACCTATACAGAACAAACTGACTGAACTGTGGTCATTATTTGATTTTGTTTTCCCTGGAAAGTTGGGTGTTTTGCCTGTATTTGAATCCGAGTTTGCTGTTCCTATAGCAGTTGGTGGATATGCAAATGCTTCACCATTACAAGTATCAACAGCATACAGGTGTGCTGTGATGCTTCGTGATTTGATCATGCCTTATCTTCTTCGGCGGATGAAAGCAGATGTGGATGCCCAGCTTCCGAAGAAAACTGAACATGTTTTATTCTGTAGCCTTACTACCGAGCAAGTATCTGCGTATAGAGCATTTTTGGCAAGCTCTGAAGTGGAGCAAATCCTGGATGGACGGAAGAACTCTCTTTATGGAATTGACGTAATGCGTAAGATTTGCAACCACCCTGACTTGCTTGAAAGGGAACATGCATTTAGCAATCCAGACTATGGAAATCCAGAACGCAGTGGGAAAATGAAAGTTGTGGCACAGGTGCTTAATGTTTGGAAGGAACAGGGTCATCGAGTTCTTCTCTTTACTCAAACCCAACAAATGCTTGACATTATTGAGAACTTTTTGAACACTTCTGGCCATAATTACCGGAGAATGGATGGAGTTACTCCCATAAAACAAAGGATGGCTTTAATTGATGAATTTAATGAGTCAAGTGAAGTATTTATATTCATTTTAACAACCAAAGTTGGGGGCTTGGGGACGAATCTTACTGGTGCAGACAGGGTGATTATCTTTGACCCTGATTGGAATCCTTCAACTGACGTTCAGGCCAGAGAACGAGCTTGGCGAATTGGTCAGACACGGGATGTGACAGTATATAGGTTGATCACACGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACTAATAAGATATTGAAGAACCCACAGCAGAAAAGATTCTTTAAAGCTCGAGATATGAAAGATCTTTTTACACTGAACGTGGATGACAAAAGTGGGTCAACTGAAACGTCAACTATTTTCGGTCAAATATCTGAAGAAGTATATATTGCTGGGCCACACGAAGATAAGCAAGATAAGCATAAACATCCTCAAACTGCTGAATCAGGTTCTGGTGATGTTGTAGTTAATAGCGATGGCAGGTCAAAAACCAGATCAGCCAAGGGAAAGGGAAAAGAAAAGACAGATCGTCTTGATGAAGCAGATGAGGAAACAAATATATTGAAAAGTCTTTTTGATGCCCATGGATTACATAGTGCTGTGAACCATGATTTGATCATGAATGCCAATGATGAGGAAAAAATGAGGCTTGAGGAGCAAGCTTCCCGGGTGGCACAGAGAGCTGCAGAAGCTTTACGTCAGTCACGAAAGCTCCGAAGTCGTGACAGCATTGCAGTTCCTACATGGACAGGAAGGTCAGGAAGTGCTGGTGCACCATCATCTTTCCGTCAAAAGTTTGGTTCAACCGTGAATTCCCAGTTGGTAAGGAATTGCAAAGAATCTGATGAATTGACTGGTGATGGAAGTAGAAAATTAAATGGATCTGCTGCTGGGGCATCTGTTGGTAAGGCATTATCTTCTGCTGAGCTTTTGGCTCGAATCCGGGGTAACCAAGAAAAAGCCATTGGTGTTGGGCTAGAACATCATCTTGGCACGGCCGTTAACCCATCTAATCAAGCAAGATCTGTGGATGTCGGATCCTCTAGGGCTTCTAAAAAGGTAGATGGGGTGCAACCTGAGGTACTGATTCGGCAAATCTGTACATTTCTACAACGGAGAGGTGGTTGTTCTGATTCCTCCAGCATAGTGCAGCATTTCAAGGACAGGATACCCTCAACAGATCTTGCCCTGTTTAAGAATCTGTTAAAGGAAATAGCATCTCTGGAAAAAGGACCAAATGGATCACAATGGATTCTGAAGCCAGACTATCGAGAATGA 3681 0.4148 MEEDEDRILLNSLGLESANHECIEKDVLAEAQNDVVTITEADGNSKEESPQKYENVDPSSIGKAQLYHKLRAVDFEINAVASTIQQVRNAESDGVCIDGGADNREEGTTKDISSNGLNLQHVLASDRLESLKKTKAQLEKELLDLCKEKPCRSIDGDKDNEIFNLVKEERRSKRKPKEVKSLPKGSGKQRKTVSFNDDVDFDAVLDATSAGFVETERDHLVRKGILTPFSNLKGFERRFQQSETSSSYGVSQEETTDDLASSSIERAAQSISEAARARPTTKLLESEDLPKLDAPTHPFVRLKVPLKLPQSQERELEKKNNLKRKKRRPLPGRKWTKRVSCEEIQSRETDESSGCLDPSSCENLDAQDFESDDHEPSFITLEGGLKIPDNIFDALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGMYKPSIIICPVTLLRQWKREVQKWYPKFHVELLHDSVREPDVRKKQSKCDESDYDSNSSSDSDYETNIQSKSTRKWESLITRVMRTESGLLITTYEQLRILRDLLLDIEWGYAILDEGHRIRNPNAEITLVCKQLQTIHRIIMTGSPIQNKLTELWSLFDFVFPGKLGVLPVFESEFAVPIAVGGYANASPLQVSTAYRCAVMLRDLIMPYLLRRMKADVDAQLPKKTEHVLFCSLTTEQVSAYRAFLASSEVEQILDGRKNSLYGIDVMRKICNHPDLLEREHAFSNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIIENFLNTSGHNYRRMDGVTPIKQRMALIDEFNESSEVFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDVQARERAWRIGQTRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDDKSGSTETSTIFGQISEEVYIAGPHEDKQDKHKHPQTAESGSGDVVVNSDGRSKTRSAKGKGKEKTDRLDEADEETNILKSLFDAHGLHSAVNHDLIMNANDEEKMRLEEQASRVAQRAAEALRQSRKLRSRDSIAVPTWTGRSGSAGAPSSFRQKFGSTVNSQLVRNCKESDELTGDGSRKLNGSAAGASVGKALSSAELLARIRGNQEKAIGVGLEHHLGTAVNPSNQARSVDVGSSRASKKVDGVQPEVLIRQICTFLQRRGGCSDSSSIVQHFKDRIPSTDLALFKNLLKEIASLEKGPNGSQWILKPDYRE 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral954g00004 1226 FunFam DNA excision repair protein ERCC-6 663 942 - -
Pral954g00004 1226 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 407 606 IPR014001 -
Pral954g00004 1226 FunFam Protein CHROMATIN REMODELING 8 373 655 - -
Pral954g00004 1226 Gene3D - 662 948 IPR027417 -
Pral954g00004 1226 MobiDBLite consensus disorder prediction 242 269 - -
Pral954g00004 1226 Gene3D - 367 655 IPR038718 -
Pral954g00004 1226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 656 IPR027417 -
Pral954g00004 1226 MobiDBLite consensus disorder prediction 936 982 - -
Pral954g00004 1226 CDD DEXHc_ERCC6 395 605 - -
Pral954g00004 1226 MobiDBLite consensus disorder prediction 311 358 - -
Pral954g00004 1226 Pfam SNF2-related domain 398 720 IPR000330 GO:0005524|GO:0140658
Pral954g00004 1226 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 743 902 IPR001650 -
Pral954g00004 1226 Coils Coil 1008 1035 - -
Pral954g00004 1226 Coils Coil 121 148 - -
Pral954g00004 1226 MobiDBLite consensus disorder prediction 242 290 - -
Pral954g00004 1226 SMART helicmild6 769 852 IPR001650 -
Pral954g00004 1226 MobiDBLite consensus disorder prediction 167 192 - -
Pral954g00004 1226 MobiDBLite consensus disorder prediction 964 982 - -
Pral954g00004 1226 Pfam Helicase conserved C-terminal domain 745 852 IPR001650 -
Pral954g00004 1226 CDD CSB_WHD 1156 1225 - -
Pral954g00004 1226 SMART ultradead3 391 614 IPR014001 -
Pral954g00004 1226 CDD SF2_C_SNF 738 863 - -
Pral954g00004 1226 MobiDBLite consensus disorder prediction 485 508 - -
Pral954g00004 1226 MobiDBLite consensus disorder prediction 335 350 - -
Pral954g00004 1226 PANTHER SNF2/RAD54 FAMILY MEMBER 173 1206 - -
Pral954g00004 1226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 658 917 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral954g00004 Pral-Chr954 7283 14468 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral954g00004 695 906 RAD5 or RAD16-like Gene Family AT5G22750 30.698 8.22e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral954g00004 SNF2_N 2.3e-62 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral954g00004 K10841 - gmx:100820025 1786.54