Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral954g00004 | ATGGAGGAAGACGAAGACAGAATCTTACTCAATAGTTTGGGCCTAGAGTCTGCCAATCACGAATGCATCGAAAAAGACGTATTAGCTGAGGCACAGAATGACGTGGTGACCATTACTGAAGCTGATGGAAATTCAAAGGAAGAGTCTCCTCAGAAATATGAAAATGTTGATCCATCATCTATTGGCAAAGCGCAACTTTATCATAAGTTGAGAGCAGTAGATTTTGAAATAAATGCAGTTGCTTCCACTATCCAACAAGTGAGAAATGCTGAAAGTGATGGAGTTTGTATTGATGGTGGTGCTGACAATCGGGAGGAAGGGACTACCAAGGATATTTCCTCCAACGGTTTGAATCTTCAACATGTTCTTGCTTCTGATAGGTTAGAAAGCCTAAAGAAGACAAAGGCTCAACTAGAAAAAGAGCTTTTAGATTTGTGCAAAGAGAAACCTTGCAGAAGTATTGATGGGGACAAAGATAATGAGATCTTTAATTTGGTTAAGGAAGAGCGAAGATCCAAGAGGAAGCCTAAAGAAGTTAAAAGTTTACCAAAAGGCTCAGGGAAACAGCGTAAAACAGTTTCATTTAATGACGATGTTGATTTTGATGCAGTTTTAGATGCTACCTCAGCAGGCTTTGTTGAGACGGAAAGGGACCATTTGGTAAGGAAAGGGATTTTGACCCCATTTTCTAACCTGAAGGGCTTTGAACGCCGCTTTCAACAATCAGAAACATCTAGTAGTTATGGTGTGAGTCAAGAAGAAACGACTGATGATCTTGCTTCTTCTAGTATTGAAAGAGCTGCCCAATCAATATCTGAGGCAGCAAGAGCTCGCCCAACCACCAAGTTGCTTGAGTCTGAAGATCTGCCAAAACTTGATGCACCCACTCATCCTTTTGTCAGACTCAAAGTACCACTAAAACTTCCTCAGTCCCAAGAAAGAGAGCTAGAGAAGAAAAATAATTTGAAAAGGAAAAAGAGGCGACCTTTGCCTGGTAGGAAATGGACAAAGCGTGTTTCTTGTGAGGAAATACAGTCAAGAGAGACTGATGAATCAAGTGGTTGCCTGGACCCTTCCAGTTGTGAAAATTTAGATGCACAGGATTTTGAATCTGACGATCACGAACCTTCTTTTATAACATTAGAAGGCGGACTGAAAATCCCTGATAATATTTTCGATGCACTATTTGACTATCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATCATTGGTGATGAGATGGGTCTCGGTAAAACCATCCAGGTTTTATCTTTTCTTGGTGCATTGCATTTTAGTGGCATGTATAAACCAAGCATTATCATTTGTCCTGTGACCCTGTTGCGACAGTGGAAAAGGGAAGTTCAAAAATGGTACCCAAAATTTCATGTAGAGCTTTTACATGATTCTGTGCGAGAACCTGATGTTAGAAAGAAGCAGTCCAAGTGTGATGAATCGGACTATGATAGTAATAGTTCAAGTGACAGTGATTATGAGACCAATATTCAATCAAAAAGCACAAGAAAATGGGAATCCCTGATAACTCGTGTAATGAGAACAGAATCTGGATTGCTTATCACAACATATGAGCAGCTCAGAATATTGAGGGACCTGTTACTCGACATTGAATGGGGTTATGCAATTCTTGATGAAGGACACAGAATAAGGAATCCAAATGCTGAAATTACGCTGGTTTGCAAACAGCTGCAGACTATACACCGTATCATAATGACTGGCTCACCTATACAGAACAAACTGACTGAACTGTGGTCATTATTTGATTTTGTTTTCCCTGGAAAGTTGGGTGTTTTGCCTGTATTTGAATCCGAGTTTGCTGTTCCTATAGCAGTTGGTGGATATGCAAATGCTTCACCATTACAAGTATCAACAGCATACAGGTGTGCTGTGATGCTTCGTGATTTGATCATGCCTTATCTTCTTCGGCGGATGAAAGCAGATGTGGATGCCCAGCTTCCGAAGAAAACTGAACATGTTTTATTCTGTAGCCTTACTACCGAGCAAGTATCTGCGTATAGAGCATTTTTGGCAAGCTCTGAAGTGGAGCAAATCCTGGATGGACGGAAGAACTCTCTTTATGGAATTGACGTAATGCGTAAGATTTGCAACCACCCTGACTTGCTTGAAAGGGAACATGCATTTAGCAATCCAGACTATGGAAATCCAGAACGCAGTGGGAAAATGAAAGTTGTGGCACAGGTGCTTAATGTTTGGAAGGAACAGGGTCATCGAGTTCTTCTCTTTACTCAAACCCAACAAATGCTTGACATTATTGAGAACTTTTTGAACACTTCTGGCCATAATTACCGGAGAATGGATGGAGTTACTCCCATAAAACAAAGGATGGCTTTAATTGATGAATTTAATGAGTCAAGTGAAGTATTTATATTCATTTTAACAACCAAAGTTGGGGGCTTGGGGACGAATCTTACTGGTGCAGACAGGGTGATTATCTTTGACCCTGATTGGAATCCTTCAACTGACGTTCAGGCCAGAGAACGAGCTTGGCGAATTGGTCAGACACGGGATGTGACAGTATATAGGTTGATCACACGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACTAATAAGATATTGAAGAACCCACAGCAGAAAAGATTCTTTAAAGCTCGAGATATGAAAGATCTTTTTACACTGAACGTGGATGACAAAAGTGGGTCAACTGAAACGTCAACTATTTTCGGTCAAATATCTGAAGAAGTATATATTGCTGGGCCACACGAAGATAAGCAAGATAAGCATAAACATCCTCAAACTGCTGAATCAGGTTCTGGTGATGTTGTAGTTAATAGCGATGGCAGGTCAAAAACCAGATCAGCCAAGGGAAAGGGAAAAGAAAAGACAGATCGTCTTGATGAAGCAGATGAGGAAACAAATATATTGAAAAGTCTTTTTGATGCCCATGGATTACATAGTGCTGTGAACCATGATTTGATCATGAATGCCAATGATGAGGAAAAAATGAGGCTTGAGGAGCAAGCTTCCCGGGTGGCACAGAGAGCTGCAGAAGCTTTACGTCAGTCACGAAAGCTCCGAAGTCGTGACAGCATTGCAGTTCCTACATGGACAGGAAGGTCAGGAAGTGCTGGTGCACCATCATCTTTCCGTCAAAAGTTTGGTTCAACCGTGAATTCCCAGTTGGTAAGGAATTGCAAAGAATCTGATGAATTGACTGGTGATGGAAGTAGAAAATTAAATGGATCTGCTGCTGGGGCATCTGTTGGTAAGGCATTATCTTCTGCTGAGCTTTTGGCTCGAATCCGGGGTAACCAAGAAAAAGCCATTGGTGTTGGGCTAGAACATCATCTTGGCACGGCCGTTAACCCATCTAATCAAGCAAGATCTGTGGATGTCGGATCCTCTAGGGCTTCTAAAAAGGTAGATGGGGTGCAACCTGAGGTACTGATTCGGCAAATCTGTACATTTCTACAACGGAGAGGTGGTTGTTCTGATTCCTCCAGCATAGTGCAGCATTTCAAGGACAGGATACCCTCAACAGATCTTGCCCTGTTTAAGAATCTGTTAAAGGAAATAGCATCTCTGGAAAAAGGACCAAATGGATCACAATGGATTCTGAAGCCAGACTATCGAGAATGA | 3681 | 0.4148 | MEEDEDRILLNSLGLESANHECIEKDVLAEAQNDVVTITEADGNSKEESPQKYENVDPSSIGKAQLYHKLRAVDFEINAVASTIQQVRNAESDGVCIDGGADNREEGTTKDISSNGLNLQHVLASDRLESLKKTKAQLEKELLDLCKEKPCRSIDGDKDNEIFNLVKEERRSKRKPKEVKSLPKGSGKQRKTVSFNDDVDFDAVLDATSAGFVETERDHLVRKGILTPFSNLKGFERRFQQSETSSSYGVSQEETTDDLASSSIERAAQSISEAARARPTTKLLESEDLPKLDAPTHPFVRLKVPLKLPQSQERELEKKNNLKRKKRRPLPGRKWTKRVSCEEIQSRETDESSGCLDPSSCENLDAQDFESDDHEPSFITLEGGLKIPDNIFDALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGMYKPSIIICPVTLLRQWKREVQKWYPKFHVELLHDSVREPDVRKKQSKCDESDYDSNSSSDSDYETNIQSKSTRKWESLITRVMRTESGLLITTYEQLRILRDLLLDIEWGYAILDEGHRIRNPNAEITLVCKQLQTIHRIIMTGSPIQNKLTELWSLFDFVFPGKLGVLPVFESEFAVPIAVGGYANASPLQVSTAYRCAVMLRDLIMPYLLRRMKADVDAQLPKKTEHVLFCSLTTEQVSAYRAFLASSEVEQILDGRKNSLYGIDVMRKICNHPDLLEREHAFSNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIIENFLNTSGHNYRRMDGVTPIKQRMALIDEFNESSEVFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDVQARERAWRIGQTRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDDKSGSTETSTIFGQISEEVYIAGPHEDKQDKHKHPQTAESGSGDVVVNSDGRSKTRSAKGKGKEKTDRLDEADEETNILKSLFDAHGLHSAVNHDLIMNANDEEKMRLEEQASRVAQRAAEALRQSRKLRSRDSIAVPTWTGRSGSAGAPSSFRQKFGSTVNSQLVRNCKESDELTGDGSRKLNGSAAGASVGKALSSAELLARIRGNQEKAIGVGLEHHLGTAVNPSNQARSVDVGSSRASKKVDGVQPEVLIRQICTFLQRRGGCSDSSSIVQHFKDRIPSTDLALFKNLLKEIASLEKGPNGSQWILKPDYRE | 1226 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral954g00004 | 1226 | FunFam | DNA excision repair protein ERCC-6 | 663 | 942 | - | - | |
Pral954g00004 | 1226 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 407 | 606 | IPR014001 | - | |
Pral954g00004 | 1226 | FunFam | Protein CHROMATIN REMODELING 8 | 373 | 655 | - | - | |
Pral954g00004 | 1226 | Gene3D | - | 662 | 948 | IPR027417 | - | |
Pral954g00004 | 1226 | MobiDBLite | consensus disorder prediction | 242 | 269 | - | - | |
Pral954g00004 | 1226 | Gene3D | - | 367 | 655 | IPR038718 | - | |
Pral954g00004 | 1226 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 378 | 656 | IPR027417 | - | |
Pral954g00004 | 1226 | MobiDBLite | consensus disorder prediction | 936 | 982 | - | - | |
Pral954g00004 | 1226 | CDD | DEXHc_ERCC6 | 395 | 605 | - | - | |
Pral954g00004 | 1226 | MobiDBLite | consensus disorder prediction | 311 | 358 | - | - | |
Pral954g00004 | 1226 | Pfam | SNF2-related domain | 398 | 720 | IPR000330 | GO:0005524|GO:0140658 | |
Pral954g00004 | 1226 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 743 | 902 | IPR001650 | - | |
Pral954g00004 | 1226 | Coils | Coil | 1008 | 1035 | - | - | |
Pral954g00004 | 1226 | Coils | Coil | 121 | 148 | - | - | |
Pral954g00004 | 1226 | MobiDBLite | consensus disorder prediction | 242 | 290 | - | - | |
Pral954g00004 | 1226 | SMART | helicmild6 | 769 | 852 | IPR001650 | - | |
Pral954g00004 | 1226 | MobiDBLite | consensus disorder prediction | 167 | 192 | - | - | |
Pral954g00004 | 1226 | MobiDBLite | consensus disorder prediction | 964 | 982 | - | - | |
Pral954g00004 | 1226 | Pfam | Helicase conserved C-terminal domain | 745 | 852 | IPR001650 | - | |
Pral954g00004 | 1226 | CDD | CSB_WHD | 1156 | 1225 | - | - | |
Pral954g00004 | 1226 | SMART | ultradead3 | 391 | 614 | IPR014001 | - | |
Pral954g00004 | 1226 | CDD | SF2_C_SNF | 738 | 863 | - | - | |
Pral954g00004 | 1226 | MobiDBLite | consensus disorder prediction | 485 | 508 | - | - | |
Pral954g00004 | 1226 | MobiDBLite | consensus disorder prediction | 335 | 350 | - | - | |
Pral954g00004 | 1226 | PANTHER | SNF2/RAD54 FAMILY MEMBER | 173 | 1206 | - | - | |
Pral954g00004 | 1226 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 658 | 917 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral954g00004 | Pral-Chr954 | 7283 | 14468 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral954g00004 | 695 | 906 | RAD5 or RAD16-like Gene Family | AT5G22750 | 30.698 | 8.22e-25 | 110 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Pral954g00004 | SNF2_N | 2.3e-62 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral954g00004 | K10841 | - | gmx:100820025 | 1786.54 |