Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral953g00001 ATGGGCAAAGGAAGAGCTCCATGCTGTGATAAGAACAAGGTGAAGAGAGGACCTTGGAGTCCCCAAGAAGATCTTAAGCTCGTCACCTTCATCCAGAAACATGGTCATCAGAATTGGCGTTCCCTCCCCAAGCAAGCAGGGCTTCTTCGATGTGGAAAAAGCTGTCGTCTGAGATGGATCAACTACCTAAGGCCTGATGTGAAGAGAGGAAACTTCACAGAAGAAGAAGAAGAAACCATAATGAAGCTTCATGAAGTCTTAGGAAACAAGTGGTCAAAAATTGCGTCCGAGTTGCCCGGTAGAACAGACAATGAGATCAAGAATGTGTGGCACACCCATTTGAAGAAGAAATTATTATCGAAGAACAGTTCAGATAATAATATCAACCTGTCCACTAGCACTGATCAGTCCAAGCAAGAATCATGCATAACCTCTTCTTCGTCGTCTTCCTCAACTGGACGCCAAGAAGCGACAACATTAATTCCTCAGAAAACTGCAGACAATAATGAGCAGAACTTTGAAAATCCCACTAAAGAGTCCTCTTCACCAAGTTCCTTTCAGTGTTGTACTGATCAATCATCAACAACTATCTGCAAATTACAAGACGATAATCAGCTGGAACTAGTTGTAGCAGGTTCTTCTTCATTGTATCAAGGAGGGCCAGATAATAATGATTATAGTGATACAGTACTAAACGAGGTTGTTGACAAGCCAGCTAATGATAACACTATTGATTTGCTTGAAATACCATTGGAGGCAGACGATGATTTTTGGAACATGCTGGATGATGACAGCAACATAGGAGGAGGATCCTTCGTGTCAGATCATCATCAGGTTCATTCAGATGCTGAAACTATGAAGTGGATCAGGGAGATTGAGAAGGATCTTGGATTGGAACCTCAACAGCCATCATCTGATCTAATCATAGGATTGCCTGATGTACACATGTGGGCTAATAATGTTAGTTCTGGTTTCTGA 978 0.4202 MGKGRAPCCDKNKVKRGPWSPQEDLKLVTFIQKHGHQNWRSLPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTEEEEETIMKLHEVLGNKWSKIASELPGRTDNEIKNVWHTHLKKKLLSKNSSDNNINLSTSTDQSKQESCITSSSSSSSTGRQEATTLIPQKTADNNEQNFENPTKESSSPSSFQCCTDQSSTTICKLQDDNQLELVVAGSSSLYQGGPDNNDYSDTVLNEVVDKPANDNTIDLLEIPLEADDDFWNMLDDDSNIGGGSFVSDHHQVHSDAETMKWIREIEKDLGLEPQQPSSDLIIGLPDVHMWANNVSSGF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral953g00001 325 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Pral953g00001 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pral953g00001 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Pral953g00001 325 Gene3D - 16 68 - -
Pral953g00001 325 FunFam Transcription factor RAX3 9 69 - -
Pral953g00001 325 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Pral953g00001 325 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pral953g00001 325 SMART sant 68 116 IPR001005 -
Pral953g00001 325 SMART sant 15 65 IPR001005 -
Pral953g00001 325 Gene3D - 70 145 - -
Pral953g00001 325 CDD SANT 71 114 IPR001005 -
Pral953g00001 325 CDD SANT 18 63 IPR001005 -
Pral953g00001 325 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Pral953g00001 325 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pral953g00001 325 MobiDBLite consensus disorder prediction 122 187 - -
Pral953g00001 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral953g00001 Pral-Chr953 3277 5732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral953g00001 1 299 MYB Transcription Factor Family AT1G79180 43.658 5.29e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral953g00001 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral953g00001 K09422 - tcc:18594753 273.478