Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral947g00005 ATGGGGGTGACCTCTGGCTCCAATATCAACCAGCAATCGTCTTCTAAAATGCTACCTCCACGCCAGCAATCTCGTGTTGGAGGACTGCAAACTTCACTCTCCCTAGTTTCTTCAGATCCTCGTCTCTCTCCTGAGGAACCTCGATCAAACTCTGACAATATTCGAGAATCTCCTACTGAAAGTGCTAGTTCACGAGAAACCTGGCCCACTGCTGAAGCTATTGCTGCAAAAAAAATGGCAAATGGGAAGGCTGAGGATGATTGCCCTGAGCTGTCAGTCATTCGTCGTGTTTCTAGTGCTGACAAAATCACCCTTCAGGACATAGGAAGAGAAAGGGTTGACATAATATCTGAAAAGATGCATCGTCTACCTGATGAATTTTTAGAAGAGCTGAAGAACAGCCTACGAGTGATCCTTGAGGGAGGGAATGGTTCACAGCACAGGGAGGAATTCTTCACTTTGCAGAGGCTTGTTCAAAGTCGAACTGATTTAACGGCCAAGACATTGATCAGAGCACATCGTGTGCAGCTTGAAATCCTCGTTGCTATTAATACTGGAATTCAGGCATTTTTGCATCCCAACATCAGTCTTTCACAACCTTCCCTCATTGAGATCTTTGTGTACAAGAGATGCAGAAATATAGCTTGTCAGAACCAGCTTCCTGCTGATGACTGTACCTGTGAAATATGCACCAGCAGGAATGGTTTCTGCAATCTCTGCATGTGTGTAATCTGCAACAAGTTTGACTTTGAAGTAAATACGTGCCGCTGGATTGGGTGTGATTTATGCTCCCACTGGACTCATACAGATTGTGCCATTCGTGATCAACTTATTTGCATGGGCCCTTCTGCAAAGAGTGGTGCAGGACCAAGCGAAATGGTTTTCAGGTGCCAAGCATGCAAGAGGACTTCAGAGCTGTTGGGTTGGGTTAAAGATGTTTTTCAGCATTGTGCGCCATCATGGGATGGGGAGGCTTTAATGAGGGAACTTGATTTTGTTAGTAGGATCTTTCATGGTAGTAAAGACCCCAGAGGGTGGAAACTGTTTTGGAAGTGTGATGAGCTAAAGGAGAAAATGAAAAGTGGAATGGTGGAACCAAATGCTGCATGCAGTGCAATATTGATGTTTTTCCAGGAGCTTGAGGTGGACTCCCCAAAGAGCCTTGAAAATGGAGAAAGTGGAAGGATGATTGCTCCACAGGACGCATGCAATAGAATTGCTGAAGTAGTGCAGGAGGCTATAAGAAAAATGGAAATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCTTGGCTCTTGATGCTTGTGATCAAGAATTGGCAGATAAGGCGAGGGAAGCAGCAGAACTCAAGATGGACAGGCAAAAAAAGAAATCACAGATAGAAGAACTGGAGAGAATTGTAAGGCTTAAAACTGCAGAGGCTGATATGTTCCAGCTTAAGGCTAATGAGGCTAAACGAGAGGCTGAGAAGCTTCAGAGAATTGCTCTTGCCAAATCGGATAAATCAGAGGAAGAATATACTAGCAACTACTTGAAACAACGATTAAGTGAGGCTGAAGCTGAGAAGCAATATCTCTATGAGAAGATCAAACTGCAGGAGAGTTCTCGTGCTTCGCAGAGTAGTGGTGGTGACCCATCTCAGATTCTGATGTATTCCAAGATCCATGATCTGCTTTTACCTCCTAAGGCAGATAGTCAGCCTAACGAGCGTCACCCATTCCGAACAAATCCATGA 1743 0.4464 MGVTSGSNINQQSSSKMLPPRQQSRVGGLQTSLSLVSSDPRLSPEEPRSNSDNIRESPTESASSRETWPTAEAIAAKKMANGKAEDDCPELSVIRRVSSADKITLQDIGRERVDIISEKMHRLPDEFLEELKNSLRVILEGGNGSQHREEFFTLQRLVQSRTDLTAKTLIRAHRVQLEILVAINTGIQAFLHPNISLSQPSLIEIFVYKRCRNIACQNQLPADDCTCEICTSRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDQLICMGPSAKSGAGPSEMVFRCQACKRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFHGSKDPRGWKLFWKCDELKEKMKSGMVEPNAACSAILMFFQELEVDSPKSLENGESGRMIAPQDACNRIAEVVQEAIRKMEMVADEKMRMFKKARLALDACDQELADKAREAAELKMDRQKKKSQIEELERIVRLKTAEADMFQLKANEAKREAEKLQRIALAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKLQESSRASQSSGGDPSQILMYSKIHDLLLPPKADSQPNERHPFRTNP 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral947g00005 580 Coils Coil 435 504 - -
Pral947g00005 580 MobiDBLite consensus disorder prediction 535 580 - -
Pral947g00005 580 Pfam PHD - plant homeodomain finger protein 211 334 IPR032881 -
Pral947g00005 580 MobiDBLite consensus disorder prediction 1 39 - -
Pral947g00005 580 MobiDBLite consensus disorder prediction 54 68 - -
Pral947g00005 580 MobiDBLite consensus disorder prediction 1 68 - -
Pral947g00005 580 Pfam Coiled-coil region of Oberon 429 561 IPR032535 -
Pral947g00005 580 SMART PHD_3 241 301 IPR001965 -
Pral947g00005 580 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 26 563 IPR004082 -
Pral947g00005 580 PIRSF UCP025218 5 569 - -
Pral947g00005 580 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 248 268 IPR004082 -
Pral947g00005 580 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 503 525 IPR004082 -
Pral947g00005 580 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 464 484 IPR004082 -
Pral947g00005 580 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 161 176 IPR004082 -
Pral947g00005 580 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 176 191 IPR004082 -
Pral947g00005 580 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 321 340 IPR004082 -
Pral947g00005 580 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 119 141 IPR004082 -
Pral947g00005 580 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 202 223 IPR004082 -
Pral947g00005 580 MobiDBLite consensus disorder prediction 535 550 - -
Pral947g00005 580 CDD PHD_OBE1_like 241 300 IPR047578 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral947g00005 Pral-Chr947 22170 24796 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral947g00005 211 313 PHD Gene Family AT5G57380 31.731 7.40e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral947g00005 - - qlo:115955710 1009.59