Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral947g00004 ATGCTACCTCCACGCCAGCAATCTCGTGTTGGAGGACTGCAAACTTCACTCTCCCTAGTTTCTTCAGATCCTCGTCTCTCTCCTGAGGAACCTCGATCAAACTCTGACAATATTCGAGAATCTCCTACTGAAAGTGCTAGTTCACGAGAAACCTGGCCCACTGCTGAAGCTATTGCTGCAAAAAAAATGGCAAATGGGAAGGCTGAGGATGATTGCCCTGAGCTGTCAGTCATTCGTCGTGTTTCTAGTGCTGACAAAATCACCCTTCAGGACATAGGAAGAGAAAGGGTTGACATAATATCTGAAAAGATGCATCGTCTACCTGATGAATTTTTAGAAGAGCTGAAGAACAGCCTACGAGTGATCCTTGAGGGAGGGAATGGTTCACAGCACAGGGAGGAATTCTTCACTTTGCAGAGGCTTGTTCAAAGTCGAACTGATTTAACGGCCAAGACATTGATCAGAGCACATCGTGTGCAGCTTGAAATCCTCGTTGCTATTAATACTGGAATTCAGGCATTTTTGCATCCCAACATCAGTCTTTCACAACCTTCCCTCATTGAGATCTTTGTGTACAAGAGATGCAGAAATATAGCTTGTCAGAACCAGCTTCCTGCTGATGACTGTACCTGTGAAATATGCACCAGCAGGAATGGTTTCTGCAATCTCTGCATGTGTGTAATCTGCAACAAGTTTGACTTTGAAGTAAATACGTGCCGCTGGATTGGGTGTGATTTATGCTCCCACTGGACTCATACAGATTGTGCCATTCGTGATCAACTTATTTGCATGGGCCCTTCTGCAAAGAGTGGTGCAGGACCAAGCGAAATGGTTTTCAGGTGCCAAGCATGCAAGAGGACTTCAGAGCTGTTGGGTTGGGTTAAAGATGTTTTTCAGCATTGTGCGCCATCATGGGATGGGGAGGCTTTAATGAGGGAACTTGATTTTGTTAGTAGGATCTTTCATGGTAGTAAAGACCCCAGAGGGTGGAAACTGTTTTGGAAGTGTGATGAGCTAAAGGAGAAAATGAAAAGTGGAATGGTGGAACCAAATGCTGCATGCAGTGCAATATTGATGTTTTTCCAGGAGCTTGAGGTGGACTCCCCAAAGAGCCTTGAAAATGGAGAAAGTGGAAGGATGATTGCTCCACAGGACGCATGCAATAGAATTGCTGAAGTAGTGCAGGAGGCTATAAGAAAAATGGAAATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCTTGGCTCTTGATGCTTGTGATCAAGAATTGGCAGATAAGGCGAGGGAAGCAGCAGAACTCAAGATGGACAGGCAAAAAAAGAAATCACAGATAGAAGAACTGGAGAGAATTGTAAGGCTTAAAACTGCAGAGGCTGATATGTTCCAGCTTAAGGCTAATGAGGCTAAACGAGAGGCTGAGAAGCTTCAGAGAATTGCTCTTGCCAAATCGGATAAATCAGAGGAAGAATATACTAGCAACTACTTGAAACAACGATTAAGTGAGGCTGAAGCTGAGAAGCAATATCTCTATGAGAAGATCAAACTGCAGGAGAGTTCTCGTGCTTCGCAGAGTAGTGGTGGTGACCCATCTCAGATTCTGATGTATTCCAAGATCCATGATCTGCTTTTACCTCCTAAGGCAGATAGTCAGCCTAACGAGCGTCACCCATTCCGAACAAATCCATGA 1695 0.4454 MLPPRQQSRVGGLQTSLSLVSSDPRLSPEEPRSNSDNIRESPTESASSRETWPTAEAIAAKKMANGKAEDDCPELSVIRRVSSADKITLQDIGRERVDIISEKMHRLPDEFLEELKNSLRVILEGGNGSQHREEFFTLQRLVQSRTDLTAKTLIRAHRVQLEILVAINTGIQAFLHPNISLSQPSLIEIFVYKRCRNIACQNQLPADDCTCEICTSRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDQLICMGPSAKSGAGPSEMVFRCQACKRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFHGSKDPRGWKLFWKCDELKEKMKSGMVEPNAACSAILMFFQELEVDSPKSLENGESGRMIAPQDACNRIAEVVQEAIRKMEMVADEKMRMFKKARLALDACDQELADKAREAAELKMDRQKKKSQIEELERIVRLKTAEADMFQLKANEAKREAEKLQRIALAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKLQESSRASQSSGGDPSQILMYSKIHDLLLPPKADSQPNERHPFRTNP 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral947g00004 564 Pfam Coiled-coil region of Oberon 413 545 IPR032535 -
Pral947g00004 564 MobiDBLite consensus disorder prediction 1 52 - -
Pral947g00004 564 Coils Coil 419 488 - -
Pral947g00004 564 MobiDBLite consensus disorder prediction 519 564 - -
Pral947g00004 564 SMART PHD_3 225 285 IPR001965 -
Pral947g00004 564 MobiDBLite consensus disorder prediction 38 52 - -
Pral947g00004 564 PIRSF UCP025218 1 553 - -
Pral947g00004 564 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 27 547 IPR004082 -
Pral947g00004 564 MobiDBLite consensus disorder prediction 1 23 - -
Pral947g00004 564 MobiDBLite consensus disorder prediction 519 534 - -
Pral947g00004 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 305 324 IPR004082 -
Pral947g00004 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 487 509 IPR004082 -
Pral947g00004 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 186 207 IPR004082 -
Pral947g00004 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 160 175 IPR004082 -
Pral947g00004 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 448 468 IPR004082 -
Pral947g00004 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 145 160 IPR004082 -
Pral947g00004 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 103 125 IPR004082 -
Pral947g00004 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 232 252 IPR004082 -
Pral947g00004 564 CDD PHD_OBE1_like 225 284 IPR047578 -
Pral947g00004 564 Pfam PHD - plant homeodomain finger protein 195 318 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral947g00004 Pral-Chr947 21084 24471 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral947g00004 195 297 PHD Gene Family AT5G57380 31.731 7.84e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral947g00004 - - gmx:100795450 1008.05