LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral947g00002	ATGGGGGTGACCTCAGGCTCCAATATCAACCAGCAATCGTCTTCTAAAATGCTACCTCCACGCCAGCAATCTCGTGTTGGAGGACTGCAAACTTCACTATCCCTAGTTTCTTCAGATCCTCGTCTCTCTCCTGAGGAACCTAGATCAAACTCTGACAATATTCGAGAATCTCCTACTGAAAGTGCTAGTTCACGAGAAACCTGGCCCACTGCTGAAGCTATTGCTGCAAAAAAAATGGCAAATGGGAAGGCTGAGGATGATTGCCCTGAGCTGTCAGTCATCCGTCGTGTTTCTAGTGCCAACAAAATCACCCTTCAGGACATAGGAAGAGAAAGGGTTGACATAATATCTGAAAAGATGCATCGTCTACCTGATGAATTTTTAGAAGAACTGAAGAACAGCCTACGAGTGATCCTTGAGGGAGGGAATGGTTCACAGCACAGGGAGGAATTCTTCACTTTGCAGAGGCTTGTTCAAAGTCGAACTGATTTGACGGCCAAGACATTGATCAGAGCACATCGTGTGCAGCTTGAAATCCTCGTGGCCATTAATACTGGAATTCAGGCATTTTTGCATCCCAACATCGGTCTTTCACAACCTTCCCTCATTGAGATCTTTGTGTACAGGAGATGCAGAAATATCGCTTGTCAGAACCAGCTTCCTGCTGATGACTGTACCTGTGAAATATGCACCAGCAGGAATGGTTTCTGCAATCTCTGCATGTGTGTAATCTGCAACAAGTTTGACTTCGAAGTAAATACTTGCCGCTGGATTGGGTGTGATTTATGCTCTCACTGGACTCATACAGACTGTGCCATTCGTGATCAACTTATTTGCATGGGCCCTTCTGCAAAGAGTGGTGCAGGACCAAGCGAAATGGTTTTCAGGTGCCAAGCATGCAAGAGGACTTCAGAGCTGTTGGGTTGGGTTAAAGATGTTTTTCAGCATTGTGCGCCATCATGGGATGGGGAGGCTTTAATGAGGGAACTTGATTTTGTTAGTAGGATCTTTCATGGTAGTAAAGACCCCAGGGGGAGGAAACTGTGCCGGAATTGTGATGATCTAAAGGAGAAAATGAAAAGTGGAATGGTGGAACCAAATGCTGCATGCAGTGCAATGTTGATGCTTTTCCAAGAGCTTGAGGTGGACTCCCCAAAGAGCCTTGAAAATGGAGAAAGTGGAAGGATGATTGCTCCACAGGACGCATGCAATAGAATTGCTGAAGTCGTGCAGGAGGCTATAAGAAAAATGGAAATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGACTCGCTTGGCTCTTGATGCTTGTGATCGAGAATTGGCAGATAAGGCGAGGGAAGCGGCAGAACTCAAGATGGACAGGCAAAAAAAGAAATCACAGATAGAAGAACTGGAGAGAATTGTAAGGCTTAAAACTGCAGAGGCTGATATGTTCCAGCTTAAGGCTAATGAGGCTAAACGAGAGGCTGAGAGGCTTCAGCGAATTGCTCTTGCCAAATCGGATAAATCAGAGGAAGAATATACAAGCAACTACTTGAAACAACGATTGAGTGAGGCTGAAGCTGAGAAGCAATATCTCTATGAGAAGATCAAACTGCAGGAGAGTTCTCGTGCTTCGCAGGGTAGTAGTGGCGACCCATCTCAATTGCTGATGTATTCCAAAATCCATGATCTGCTCTATAGTGTACCTCCCAAGGCAGATAGTCAGCCTAATGAGCGTCACCCATTCCGAACAAATCCATGA	1749	0.4534	MGVTSGSNINQQSSSKMLPPRQQSRVGGLQTSLSLVSSDPRLSPEEPRSNSDNIRESPTESASSRETWPTAEAIAAKKMANGKAEDDCPELSVIRRVSSANKITLQDIGRERVDIISEKMHRLPDEFLEELKNSLRVILEGGNGSQHREEFFTLQRLVQSRTDLTAKTLIRAHRVQLEILVAINTGIQAFLHPNIGLSQPSLIEIFVYRRCRNIACQNQLPADDCTCEICTSRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDQLICMGPSAKSGAGPSEMVFRCQACKRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFHGSKDPRGRKLCRNCDDLKEKMKSGMVEPNAACSAMLMLFQELEVDSPKSLENGESGRMIAPQDACNRIAEVVQEAIRKMEMVADEKMRMFKKTRLALDACDRELADKAREAAELKMDRQKKKSQIEELERIVRLKTAEADMFQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKLQESSRASQGSSGDPSQLLMYSKIHDLLYSVPPKADSQPNERHPFRTNP	582

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral947g00002	582	Coils	Coil	435	504	-	-
	Pral947g00002	582	MobiDBLite	consensus disorder prediction	1	68	-	-
	Pral947g00002	582	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	26	563	IPR004082	-
	Pral947g00002	582	SMART	PHD_3	241	301	IPR001965	-
	Pral947g00002	582	MobiDBLite	consensus disorder prediction	1	39	-	-
	Pral947g00002	582	MobiDBLite	consensus disorder prediction	563	582	-	-
	Pral947g00002	582	PIRSF	UCP025218	5	568	-	-
	Pral947g00002	582	MobiDBLite	consensus disorder prediction	54	68	-	-
	Pral947g00002	582	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	119	141	IPR004082	-
	Pral947g00002	582	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	464	484	IPR004082	-
	Pral947g00002	582	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	503	525	IPR004082	-
	Pral947g00002	582	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	321	340	IPR004082	-
	Pral947g00002	582	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	161	176	IPR004082	-
	Pral947g00002	582	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	202	223	IPR004082	-
	Pral947g00002	582	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	176	191	IPR004082	-
	Pral947g00002	582	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	248	268	IPR004082	-
	Pral947g00002	582	Pfam	Coiled-coil region of Oberon	429	561	IPR032535	-
	Pral947g00002	582	CDD	PHD_OBE1_like	241	300	IPR047578	-
	Pral947g00002	582	Pfam	PHD - plant homeodomain finger protein	211	334	IPR032881	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral947g00002	Pral-Chr947	11901	15332	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral947g00002	211	313	PHD Gene Family	AT5G57380	31.731	7.70e-09	56.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral947g00002	-		-	gmx:100795450	1010.36