Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral945g00005 ATGGCAGCTTTTTCCCATTGCCCCGACCACTTTCCTTTTCTCCTTGACACTAGCTCCTCCCTCTCTTCAGCCTTCGGAGACCAAGAACCTGCTATAAATTCCACTCCCCACCGCCACCTACCTCCCACTCACCAGACTATCTCTACTGATACTACTCAAAGCTCCGGGATGACTGTTAACGATTGTAACGAGTCTTCCGTCACCAGAACTCATGATCACTCTCCTGATACCTCCATGGCTCGAGTTAAGCTTGAAAATCCTGGCGGCGACGTGGTTCAGAAGAAGAAGAAGAAGAAGAGGCCAAACTACAGTAATGGTTCCTCCAAGGGAGCAGAAGCAAGAAACAAGAGACAGAAGAAGAGCAGCAGTAATGGTGTGGTGAAAGAAGAGGAAAAGCCAAAATCAGAAGAGAAGAAGGAACAGAAGAAGAAAATTCCACCACAGCCCCCAACAGGCTATATACATGTCAGAGCTAGGAGGGGCGAAGCAACGGATAGCCACAGCCTCGCCGAAAGGGTGAGAAGAGAGAAAATAAGTGAGAGGATGAGGATGTTGCAGCGACTCGTGCCAGGTTGTGATAAGATAACGGGAAAAGCGCTCATGTTAGACGAAATCATCAATTATGTTCAGTCCCTTCAGAATCAAGTGGAGTTTCTGTCGATGAAGCTTGCTTCTGTGAATCCCATGTTCGGAGATTTCACAATGGGCCAAGATACCCTCATGGGCACACCAGATAGGTTGAACAGTGTAGCTTCGCCTCTACCATTATCTGTTCCGCAATGCAGTACCAATCAGGCCACAAATTTTGCTGATGACTACCTTTTGAATGATTCAGCCACGGTTCTTCTTCAGGGAGAAAGACCAAATGCCTTCTCTTCCATGGATGTTCTTGGTGAGTTGTGGGATGAAGAAGACCAACGACAAAACTTTCCTAATCCCTGTGGCTTCTTCAGCACCAACTTATGGTCCTTTCAGTGTTAG 981 0.472 MAAFSHCPDHFPFLLDTSSSLSSAFGDQEPAINSTPHRHLPPTHQTISTDTTQSSGMTVNDCNESSVTRTHDHSPDTSMARVKLENPGGDVVQKKKKKKRPNYSNGSSKGAEARNKRQKKSSSNGVVKEEEKPKSEEKKEQKKKIPPQPPTGYIHVRARRGEATDSHSLAERVRREKISERMRMLQRLVPGCDKITGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFGDFTMGQDTLMGTPDRLNSVASPLPLSVPQCSTNQATNFADDYLLNDSATVLLQGERPNAFSSMDVLGELWDEEDQRQNFPNPCGFFSTNLWSFQC 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral945g00005 326 SMART finulus 168 218 IPR011598 GO:0046983
Pral945g00005 326 FunFam Basic helix-loop-helix transcription factor 159 231 - -
Pral945g00005 326 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
Pral945g00005 326 MobiDBLite consensus disorder prediction 38 65 - -
Pral945g00005 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
Pral945g00005 326 MobiDBLite consensus disorder prediction 112 145 - -
Pral945g00005 326 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 54 257 IPR024097 GO:0006355
Pral945g00005 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 229 IPR036638 GO:0046983
Pral945g00005 326 CDD bHLH_AtBPE_like 152 228 - -
Pral945g00005 326 MobiDBLite consensus disorder prediction 25 154 - -
Pral945g00005 326 Gene3D - 159 230 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral945g00005 Pral-Chr945 27417 29980 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral945g00005 106 259 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 56.604 3.29e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral945g00005 HLH 7.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral945g00005 - - gmx:100796018 273.863