Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral945g00004 ATGGCAGCTTTTTCCCATTGCCCCGACCACTTTCCTTTTCTCCTTGACACTAGCTCCTCCCTCTCTTCAGCCTTCGGAGACCAAGAACCTGCTATAAATTCCACTCCCCACCGCCACCTACCTCCCACTCACCAGACTATCTCTACTGATACTACTCAAAGCTCCGGGATGACTGTTAACGATTGTAACGAGTCTTCCGTCACCAGAACTCATGATCACTCTCCTGATACCTCCATGGCTCGAGTTAAGCTTGAAAATCCTGGCGGCGACGTGGTTCAGAAGAAGAAGAAGAAGAAGAGGCCAAACTACAGTAATGGTTCCTCCAAGGAGGGAGCAGAAGCAAGAAACAAGAGACAGAAGAAGAGCAGCAGTAATGGTGTGGTGAAAGAAGAGGAAAAGCCAAAATCAGAAGAGAAGAAGGAACAGAAGAAGAAAATTCCACCACAGCCCCCAACAGGCTATATACATGTCAGAGCTAGGAGGGGCGAAGCAACGGATAGCCACAGCCTCGCCGAAAGGGTGAGAAGAGAGAAAATAAGTGAGAGGATGAGGATGTTGCAGCGACTCGTGCCAGGTTGTGATAAGATAACGGGAAAAGCGCTCATGTTAGACGAAATCATCAATTATGTTCAGTCCCTTCAGAATCAAGTGGAGTTTCTGTCGATGAAGCTTGCTTCTGTGAATCCCATGTTCGGAGATTTCACAATGGGCCAAGATACCCTCATGGGCACACCAGATAGGTTGAACAGTGTAGCTTCGCCTCTACCATTATCTGTTCCGCAATGCAGTACCAATCAGGCCACAAATTTTGCTGATGACTACCTTTTGAATGATTCAGCCACGGTTCTTCTTCAGGGAGAAAGACCAAATGCCTTCTCTTCCATGGATGTTCTTGGTGAGTTGTGGGATGAAGAAGACCAACGACAAAACTTTCCTAATCCCTGTGGCTTCTTCAGCACCAACTTATGGTCCTTTCAGTGTTAG 984 0.4726 MAAFSHCPDHFPFLLDTSSSLSSAFGDQEPAINSTPHRHLPPTHQTISTDTTQSSGMTVNDCNESSVTRTHDHSPDTSMARVKLENPGGDVVQKKKKKKRPNYSNGSSKEGAEARNKRQKKSSSNGVVKEEEKPKSEEKKEQKKKIPPQPPTGYIHVRARRGEATDSHSLAERVRREKISERMRMLQRLVPGCDKITGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFGDFTMGQDTLMGTPDRLNSVASPLPLSVPQCSTNQATNFADDYLLNDSATVLLQGERPNAFSSMDVLGELWDEEDQRQNFPNPCGFFSTNLWSFQC 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral945g00004 327 CDD bHLH_AtBPE_like 153 229 - -
Pral945g00004 327 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 54 258 IPR024097 GO:0006355
Pral945g00004 327 FunFam Basic helix-loop-helix transcription factor 160 232 - -
Pral945g00004 327 MobiDBLite consensus disorder prediction 38 65 - -
Pral945g00004 327 Pfam Helix-loop-helix DNA-binding domain 167 214 IPR011598 GO:0046983
Pral945g00004 327 SMART finulus 169 219 IPR011598 GO:0046983
Pral945g00004 327 MobiDBLite consensus disorder prediction 111 146 - -
Pral945g00004 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 230 IPR036638 GO:0046983
Pral945g00004 327 Gene3D - 160 231 IPR036638 GO:0046983
Pral945g00004 327 MobiDBLite consensus disorder prediction 25 154 - -
Pral945g00004 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral945g00004 Pral-Chr945 27417 29980 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral945g00004 104 260 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 55.556 2.80e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral945g00004 HLH 7.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral945g00004 - - gmx:100796018 273.863