Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral944g00004 ATGATATATGCGCATGAACCAGCCATACTCCTCCGTTTATCACTAGTGGGCGCCCTCGTCGCCTTGCATACGCCGGTTGCGCACCCACCTAACGTGCGCATCCCCTCCTTCCCTATCTTCCCCATCGATACTATCGCCACCCCCCCTACCATCATCCACCTGCGCAACAAGCCCGATCACCATAAGGGCGAGATCTTGGATTTCTATTGCCGAGCCATGTCGAAGGCGCGCGTCTACGCGGATGTCAATGTCCTTCGCCCCAAGGAGTATTGGGATTACGAGTCTCTCACTGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGGAAAGTAGGAAGGGGAAAGTATAGTGAGGTGTTTGAAGGCATCAATGTTAATAGCAATGAACGCTGCATAATTAAGATTCTGAAGCCAGTCAAAAAGAAGAAGATTAAAAGAGAGATTAAAATACTCCAGAACCTTTGTGGTGGCCCAAACATTGTCAAGCTTCTCGATATTGTCAGAGATCAGCATTCAAAAACCCCCAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATCCGCTATTACATCTACGAGCTCCTTAAGGCCTTGGATTACTGTCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCACAATGTTATGATAGATCATGAACTGCGAAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAGGGAATACAATGTTCGTGTGGCTTCAAGATACTTTAAGGGGCCTGAACTTCTAGTTGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGCCTTGGTTGCATGTTTGCTGGAATGATATTCCGCAAGGAACCATTCTTTTATGGGCATGACAACCACGATCAACTTGTGAAGATAGCTAAGGTGCTTGGAACTGATGAATTGAATGCATATCTGAATAAGTATCATCTAGAGCTTGATCCTCAGCTCGATGCGCTTGTTGGAAGGCACAGTCGGAAACCCTGGTCTAAATTTATTAATTCAGATAATCAGCATCTTGTGTCTCCAGAGGCAATCGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGATAGGCTTACTGCAAGGGAAGCTATGGCACATCCATATTTCTCTCAGGTAAGGGCTGCAGAAAATAGCAGAATGAGGACACAGTGA 1218 0.4425 MIYAHEPAILLRLSLVGALVALHTPVAHPPNVRIPSFPIFPIDTIATPPTIIHLRNKPDHHKGEILDFYCRAMSKARVYADVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGREYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAENSRMRTQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral944g00004 405 SMART serkin_6 106 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral944g00004 405 Pfam Protein kinase domain 106 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral944g00004 405 SUPERFAMILY Protein kinase-like (PK-like) 79 395 IPR011009 -
Pral944g00004 405 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
Pral944g00004 405 PANTHER CASEIN KINASE II SUBUNIT ALPHA 71 401 IPR045216 GO:0004674|GO:0006468
Pral944g00004 405 FunFam Casein kinase II subunit alpha 92 182 - -
Pral944g00004 405 Gene3D Transferase(Phosphotransferase) domain 1 183 391 - -
Pral944g00004 405 FunFam Casein kinase II subunit alpha 183 394 - -
Pral944g00004 405 Gene3D Phosphorylase Kinase; domain 1 106 182 - -
Pral944g00004 405 CDD STKc_CK2_alpha 87 391 IPR045216 GO:0004674|GO:0006468
Pral944g00004 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Pral944g00004 405 ProSiteProfiles Protein kinase domain profile. 106 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral944g00004 Pral-Chr944 15565 20649 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral944g00004 104 394 Core Cell Cycle Gene Families AT3G48750 32.686 9.28e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Pral944g00004 Pkinase 2.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral944g00004 K03097 - qsa:O6P43_033892 704.516