Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral943g00168 ATGTCGGGATCAGAGACAGGAGTGATGGCCAGTAGGGAGCCCTTCAACGTGGGGCATCAGAATAGTCCGGCACCATCACAACCGGTCTTGCAAAACACGCGCATGTCCTACAATGCTGATGGCACAACTGAGTACAAGCATCTTGCTGCTATTTCCCCACCAACTTATCACTCCTCAACCGCTGTCACTGGCACTATTGTTAACGGCACCGATGCCGGACAAGGGGGCGAAGCATCGGGAATCAATGTCAACATGGTCAATGAGCCTTTGAAGAGGAAGAGAGGGAGGCCGAGGAAATACAGGCCAGATGACGCCATGGCGCTCGTCTCGGCGCCCAAACCTCCCGCGCTTTCCGTGAACCAGTCCAGTGGAGGATCTGCGTCACCCACTTCCACGTCCCTGAAGAAAGTCAGAGGCAGACCTCCCGGTTCCAGCAAGAAGCACCAGTTGGAGGCTCTAGGACCAGCTGGAGTTGGATTTACACCACATGTTATTACTGTAAAAGCTGGAGAGGATGTATCATCAAAAATTATGTCCTTTTCTCAGCATGGTTCAAGGGCTGTATGCATCCTCTCAGCAAATGGAGCCATATCTAATGTGACGCTGCGTCAAGCTGCCACATCTGGTGGAACTGTGACTTACGAGGGACGCTTTGAGATCCTATCACTATCTGGTTCTTTTCTTGTATCTGAACATGGTAGTCAGTGGAGTAGAACTGGTGGATTAAGCGTATCCTTGTCTGGACCAGATGGCCGTGTTTTAGGTGGGGGAGTTGCTGGACTTTTGACAGCTGCTTCACCTGTGCAGGTTGTTGTAGGGAGCTTCATTGCAGATGGTGGGAAGGCATCAAAGTCAGCAAACCAATTGGAAATATTATCCGCCCCACCAAAGTTGGCCCCAAGCAGTGGTCCAGTGGGGCAGAGCAGCTCCCCATCACGGGGCACTCATAGTGAATCGTCAGGAGGCCCCGGGAGCCCACTTAACCCAAGCAGAGGAGCAGCCTGCAGTAGCAGTAAACTACAAGGCATTTCATGCATGCCGTGGAAATGA 1050 0.5219 MSGSETGVMASREPFNVGHQNSPAPSQPVLQNTRMSYNADGTTEYKHLAAISPPTYHSSTAVTGTIVNGTDAGQGGEASGINVNMVNEPLKRKRGRPRKYRPDDAMALVSAPKPPALSVNQSSGGSASPTSTSLKKVRGRPPGSSKKHQLEALGPAGVGFTPHVITVKAGEDVSSKIMSFSQHGSRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLVSEHGSQWSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFIADGGKASKSANQLEILSAPPKLAPSSGPVGQSSSPSRGTHSESSGGPGSPLNPSRGAACSSSKLQGISCMPWK 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral943g00168 349 CDD DUF296 161 275 IPR005175 -
Pral943g00168 349 MobiDBLite consensus disorder prediction 295 349 - -
Pral943g00168 349 SMART AT_hook_2 91 103 IPR017956 GO:0003677
Pral943g00168 349 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Pral943g00168 349 ProSiteProfiles PPC domain profile profile. 156 297 IPR005175 -
Pral943g00168 349 SUPERFAMILY AF0104/ALDC/Ptd012-like 160 276 - -
Pral943g00168 349 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 46 328 IPR039605 GO:0003680
Pral943g00168 349 Pfam Plants and Prokaryotes Conserved (PCC) domain 162 275 IPR005175 -
Pral943g00168 349 MobiDBLite consensus disorder prediction 115 138 - -
Pral943g00168 349 Gene3D - 162 294 - -
Pral943g00168 349 MobiDBLite consensus disorder prediction 302 343 - -
Pral943g00168 349 MobiDBLite consensus disorder prediction 1 30 - -
Pral943g00168 349 MobiDBLite consensus disorder prediction 72 150 - -
Pral943g00168 349 FunFam AT-hook motif nuclear-localized protein 1-like 162 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral943g00168 Pral-Chr943 880285 885926 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral943g00168 1 349 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 52.877 1.46e-94 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral943g00168 - - vvi:100263332 418.698