Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral943g00166 ATGTCGGGATCAGAGACAGGAGTGATGGCCAGTAGGGAGCCCTTCAACGTGGGGCATCAGAATAGTCCGGCACCATCACAACCGGTCTTGCAAAACACGCGCATGTCCTACAATGCTGATGGCACAACTGAGTACAAGCATCTTGCTGCTATTTCCCCACCAACTTATCACTCCTCAACCGCTGTCACTGGCACTATTGTTAACGGCACCGATGCCGGACAAGGGGGCGAAGCATCGGGAATCAATGTCAACATGGTCAATGAGCCTTTGAAGAGGAAGAGAGGGAGGCCGAGGAAATACAGGCCAGATGACGCCATGGCGCTCGTCTCGGCGCCCAAACCTCCCGCGCTTTCCGTGAACCAGTCCAGTGGAGGATCTGCGTCACCCACTTCCACGTCCCTGAAGAAAGTCAGAGGCAGACCTCCCGGTTCCAGCAAGAAGCACCAGTTGGAGGCTCTAGGACCAGCTGGAGTTGGATTTACACCACATGTTATTACTGTAAAAGCTGGAGAGGATGTATCATCAAAAATTATGTCCTTTTCTCAGCATGGTTCAAGGGCTGTATGCATCCTCTCAGCAAATGGAGCCATATCTAATGTGACGCTGCGTCAAGCTGCCACATCTGGTGGAACTGTGACTTACGAGGGACGCTTTGAGATCCTATCACTATCTGGTTCTTTTCTTGTATCTGAACATGGTAGTCAGTGGAGTAGAACTGGTGGATTAAGCGTATCCTTGTCTGGACCAGATGGCCGTGTTTTAGGTGGGGGAGTTGCTGGACTTTTGACAGCTGCTTCACCTGTGCAGCATGTTTTCAAATATTTGCGTGGGGGAATTGATGTTCCTGCACTGTGTATTTGGAGTTTTGGGGAAGACTACAGTTGCCATTTTGTTATCTCACAATTTGAGGTTGTTGTAGGGAGCTTCATTGCAGATGGTGGGAAGGCATCAAAGTCAGCAAACCAATTGGAAATATTATCCGCCCCACCAAAGTTGGCCCCAAGCAGTGGTCCAGTGGGGCAGAGCAGCTCCCCATCACGGGGCACTCATAGTGAATCGTCAGGAGGCCCCGGGAGCCCACTTAACCCAAGCAGAGGAGCAGCCTGCAGTAGCAGTAAACTACAAGGCATTTCATGCATGCCGTGGAAATGA 1152 0.5104 MSGSETGVMASREPFNVGHQNSPAPSQPVLQNTRMSYNADGTTEYKHLAAISPPTYHSSTAVTGTIVNGTDAGQGGEASGINVNMVNEPLKRKRGRPRKYRPDDAMALVSAPKPPALSVNQSSGGSASPTSTSLKKVRGRPPGSSKKHQLEALGPAGVGFTPHVITVKAGEDVSSKIMSFSQHGSRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLVSEHGSQWSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQHVFKYLRGGIDVPALCIWSFGEDYSCHFVISQFEVVVGSFIADGGKASKSANQLEILSAPPKLAPSSGPVGQSSSPSRGTHSESSGGPGSPLNPSRGAACSSSKLQGISCMPWK 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral943g00166 383 ProSiteProfiles PPC domain profile profile. 156 305 IPR005175 -
Pral943g00166 383 Pfam Plants and Prokaryotes Conserved (PCC) domain 162 271 IPR005175 -
Pral943g00166 383 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 46 362 IPR039605 GO:0003680
Pral943g00166 383 MobiDBLite consensus disorder prediction 115 138 - -
Pral943g00166 383 CDD DUF296 161 264 IPR005175 -
Pral943g00166 383 SMART AT_hook_2 91 103 IPR017956 GO:0003677
Pral943g00166 383 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Pral943g00166 383 MobiDBLite consensus disorder prediction 329 383 - -
Pral943g00166 383 Gene3D - 162 279 - -
Pral943g00166 383 MobiDBLite consensus disorder prediction 336 377 - -
Pral943g00166 383 SUPERFAMILY AF0104/ALDC/Ptd012-like 160 273 - -
Pral943g00166 383 MobiDBLite consensus disorder prediction 1 30 - -
Pral943g00166 383 MobiDBLite consensus disorder prediction 72 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral943g00166 Pral-Chr943 880285 885930 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral943g00166 1 383 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 48.371 4.53e-87 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral943g00166 - - vvi:100263332 401.364